miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 313 bits (158), Expect = 4e-85
Identities = 174/178 (97%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
|||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 attcctcagccctatctatttatgatttcaaacatatagataggttt-tgggtttgcata 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 71 attcctcagccctatctatttatgatttcaaacatatagataggtttgtgggtttgcata 130
Query: 120 tgtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctcta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctcta 188
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
|||||||| |||||||||||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 104 ttgcatatctcaggagctttatt--acctaatgttagatctttttttggattgaagggag 161
Query: 173 ctct 176
||||
Sbjct: 162 ctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
|||||||||||||||||||| | | ||| || || || |||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 attcctcagccctatc 76
|| || ||||||||||
Sbjct: 71 atcccacagccctatc 86
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 39 aaattgagctgctgacctatggattcctcagccctatctattt 81
||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 49 aaattgagctgctgatctatggatccctcaatcctatctattt 91
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 97 tagataggttttgggtttgcatatgtcaggagct 130
||||||||||| ||||||||||| |||||||||
Sbjct: 104 tagataggtttgtggtttgcatatatcaggagct 137
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 99 gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158
||||||||| || |||||||| |||||||||||||| || |||| |||| ||||
Sbjct: 98 gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
Query: 159 tggattgaagggagctcta 177
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctcta 174
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 41 attgagctgctgacctatggattcctcagccctat 75
||||||||||||| |||||||| || |||||||||
Sbjct: 51 attgagctgctgagctatggatcccacagccctat 85
Score = 44.1 bits (22), Expect = 6e-04
Identities = 55/65 (84%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 120 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 177
Query: 173 ctcta 177
|||||
Sbjct: 178 ctcta 182
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 41 attgagctgctgacctatggattcctcagcccta 74
|||||||||| || ||||||||||| ||||||||
Sbjct: 51 attgagctgccgagctatggattccacagcccta 84
