miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaattagaaagcgcacttctttatatatagaacttcgttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 acgagatattggtgcggttcaattagaaagcgcacttctttatatatagaacttcgttat 66
Query: 61 ttaattgagccgtgccaatatcacgt 86
||||||||||||||||||||||||||
Sbjct: 67 ttaattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaattagaaagcgcacttctttatatatagaac-ttcgtta 59
||||||||||||||||||||||| || || || | || |||||||||| | || |||
Sbjct: 7 acgagatattggtgcggttcaatcag--agatcattgctctatatatagagcttttgttg 64
Query: 60 tttaattgagccgtgccaatatcacgt 86
||| |||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 gttatttaattgagccgtgccaatatcacgt 86
||||||| |||||||||||||||||||||||
Sbjct: 66 gttatttgattgagccgtgccaatatcacgt 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 gagatattggtgcggttcaattagaa 28
||||||||||||||||||||| ||||
Sbjct: 9 gagatattggtgcggttcaatcagaa 34
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaattagaaagc 31
||||||||||||||||||||||| |||||||
Sbjct: 7 acgagatattggtgcggttcaatgagaaagc 37
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaattagaaa 29
||||||||||||||||||||||| |||||
Sbjct: 7 acgagatattggtgcggttcaatcagaaa 35
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 ttatttaattgagccgtgccaatatcacg 85
|||||| ||||||||||||||||||||||
Sbjct: 64 ttatttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 gttatttaattgagccgtgccaatatcac 84
||||||| |||||||||||||||||||||
Sbjct: 64 gttatttgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 atttaattgagccgtgccaatatcacgt 86
|||| |||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaat 23
|||||||||||||||||||||||
Sbjct: 7 acgagatattggtgcggttcaat 29
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gatattggtgcggttcaattagaaagc 31
||||||||||||||||||| |||||||
Sbjct: 11 gatattggtgcggttcaataagaaagc 37
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 acgagatattggtgcggttcaattagaaagc 31
||||||||||| | |||||||||||||||||
Sbjct: 7 acgagatattgatacggttcaattagaaagc 37
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 68 attgagccgtgccaatatcacgt 90
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 82 attgagccgtgccaatatcacgt 104
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 85 attgagccgtgccaatatcacgt 107
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 72 attgagccgtgccaatatcacgt 94
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gatattggtgcggttcaattagaaagc 31
||||||||||||||||||| |||||||
Sbjct: 11 gatattggtgcggttcaatcagaaagc 37
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacgt 86
|||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacg 85
||||||||||||||||||||||
Sbjct: 72 attgagccgtgccaatatcacg 93
