miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 2 tggaagaagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaa 60
Query: 62 gaacgatctcagattgagccgcgccaatatcacttcttatttt 104
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaacgatctcagattgagccgcgccaatatcacttcttatttt 103
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
|||||||||||||||||||||||||||||||| ||||| | | | | |||||| ||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacga 66
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 91.7 bits (46), Expect = 2e-18
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacgaagagc--cgtaaagaacga 64
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||| ||||||||||||||||||||||||
Sbjct: 65 tctctgattgagccgcgccaatatcactt 93
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaattt--atgcttattttcgtaaagaac 65
|||||||||||||||||||||||||||||||| |||| ||| || | ||||| ||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatac 66
Query: 66 gatctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||||
Sbjct: 67 gatctcagattgagccgcgccaatatcactt 97
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 75.8 bits (38), Expect = 1e-13
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
|||||||||||||||||||||||| ||||| |||||||||| | ||||| | ||
Sbjct: 7 aagcgatgttggtgaggttcaatctgaagattgatttatgcttgaat--gtaaaaactga 64
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||
Sbjct: 65 tctcagattgagccgcgccaatatcactt 93
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 65 cgatctcagattgagccgcgccaatatcactt 96
||||||||||||||||||||||||||||||||
Sbjct: 57 cgatctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 65 cgatctcagattgagccgcgccaatatcactt 96
|||||||||| |||||||||||||||||||||
Sbjct: 65 cgatctcagaatgagccgcgccaatatcactt 96
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagac 38
|||||||||||||||||||||||| ||||||
Sbjct: 7 aagcgatgttggtgaggttcaatctgaagac 37
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 ctcagattgagccgcgccaatatcac 94
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcacttc 97
|||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcacttc 112
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 tcagattgagccgcgccaatatcac 94
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcac 94
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcac 94
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatccga 34
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
