miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 325 bits (164), Expect = 1e-88
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 5 ttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattcatccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattcatccaa 65
Query: 65 atgttgaggtcttgataatcgagtgccacctcagcaactgagtgaatgaagcgggagtac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atgttgaggtcttgataatcgagtgccacctcagcaactgagtgaatgaagcgggagtac 125
Query: 125 aagttgagtcttgagcttcctgtacttggactgaagggagctcc 168
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aagttgagtcttgagcttcctgtacttggactgaagggagctcc 169
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 83.8 bits (42), Expect = 7e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 103 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 162
||||||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||
Sbjct: 146 tgagtgaatgatgcgggag-acaaattgaatcttaagcttcctgtacttggactgaaggg 204
Query: 163 agctcc 168
||||||
Sbjct: 205 agctcc 210
Score = 52.0 bits (26), Expect = 2e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattcatccaa 64
||||| ||||||| |||||| || |||| || |||| |||||||||||||||||||||
Sbjct: 18 ttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattcatccaa 77
Query: 65 at 66
||
Sbjct: 78 at 79
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 75.8 bits (38), Expect = 2e-13
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 103 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 162
||||||||||| ||||||| |||| |||| || | |||||||||||||||||||||||||
Sbjct: 113 tgagtgaatgatgcgggag-acaaattgaatcctaagcttcctgtacttggactgaaggg 171
Query: 163 agctcc 168
||||||
Sbjct: 172 agctcc 177
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 aatttgctgccgactcattcatccaaat 66
|||| |||||||||||||||||||||||
Sbjct: 51 aattagctgccgactcattcatccaaat 78
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 69.9 bits (35), Expect = 1e-11
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 94 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 153
|||| ||| ||||||||||| ||||||| |||| |||| |||| || ||||| |||||||
Sbjct: 108 ctcatcaaatgagtgaatgatgcgggag-acaaattgaatcttaagtttcctatacttgg 166
Query: 154 actgaagggagctcc 168
|||||||||||||||
Sbjct: 167 actgaagggagctcc 181
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatccaaatgttgag 72
||||||| ||||| |||||||||||||||||||||||
Sbjct: 50 ttcaattagctgctgactcattcatccaaatgttgag 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 60.0 bits (30), Expect = 1e-08
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 103 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 162
||||||||||| ||||||| |||| ||| |||| |||||||||| |||||||||||||
Sbjct: 101 tgagtgaatgatgcgggag-acaaattgtatcttaagcttcctgttattggactgaaggg 159
Query: 163 agctcc 168
||||||
Sbjct: 160 agctcc 165
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 37 tcaatttgctgccgactcattcatccaaatg 67
|||||| ||||||||||||||||||||||||
Sbjct: 50 tcaattagctgccgactcattcatccaaatg 80
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 107 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 166
||||||| ||||||| |||| ||| |||| |||| ||||| ||||||||||||||||||
Sbjct: 110 tgaatgatgcgggag-acaaattggatcttaagctccctgtgcttggactgaagggagct 168
Query: 167 cc 168
||
Sbjct: 169 cc 170
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatccaaat 66
||||||| ||| |||||||||||||||||||
Sbjct: 49 ttcaattagcttccgactcattcatccaaat 79
