miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 93.7 bits (47), Expect = 9e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 agggcttactttgatgttggaagccttgctgaagtgtttgggggaactcccgggttgac 59
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 33 agggcttactttgatgttagaagcgttgctgaagtgtttgggggaactcctgggttgac 91
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 148 gagttcccttgaccacttcatgagagctta 177
|||||||||||||||||||||||| |||||
Sbjct: 11 gagttcccttgaccacttcatgagggctta 40
>RF00451;mir-395;AC194694.1/86392-86482 4081:Solanum lycopersicum
Length = 91
Score = 83.8 bits (42), Expect = 9e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 1 agggcttactttgatgttggaagccttgctgaagtgtttgggggaactcc 50
|||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 33 agggcttactttgatgttagaagccttgctgaagtgtttgtgggaactcc 82
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 148 gagttcccttgaccacttcatgagagctta 177
|||||||||||||||||||||||| |||||
Sbjct: 11 gagttcccttgaccacttcatgagggctta 40
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 77.8 bits (39), Expect = 5e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 3 ggcttactttgatgttggaagccttgctgaagtgtttgggggaactcccgg 53
||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 35 ggcttactttgttgtttgaagccttactgaagtgtttgggggaactcccgg 85
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 7 tactttgatgttggaagccttgctgaagtgtttgggggaactcccggg 54
||||||| |||| || ||| ||||||||||||||||||||||||||||
Sbjct: 42 tactttgttgtttgatgccctgctgaagtgtttgggggaactcccggg 89
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 gccttgctgaagtgtttgggggaactcc 50
||||||||||||||||||||||||||||
Sbjct: 58 gccttgctgaagtgtttgggggaactcc 85
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcccggg 54
||||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcccggg 90
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 148 gagttcccttgaccacttcatgagagcttaatat 181
|||||||||||||||||||||||| | |||||||
Sbjct: 11 gagttcccttgaccacttcatgagggattaatat 44
>RF00451;mir-395;AC145120.1/105463-105372 50514:Solanum demissum
Length = 92
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 148 gagttcccttgaccacttcatgagagcttaatat 181
|||||||||||||||||||||||| | |||||||
Sbjct: 11 gagttcccttgaccacttcatgagggattaatat 44
>RF00451;mir-395;AC145120.1/105818-105725 50514:Solanum demissum
Length = 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 148 gagttcccttgaccacttcatgagagcttaatat 181
|||||||||||||||||||||||| | |||||||
Sbjct: 11 gagttcccttgaccacttcatgagggattaatat 44
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 tgaagtgtttgggggaactcccgggtt 56
|||||||||||||||||||| ||||||
Sbjct: 65 tgaagtgtttgggggaactcgcgggtt 91
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcccgg 53
|||||||||||||||||||||||||
Sbjct: 63 ctgaagtgtttgggggaactcccgg 87
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcccgg 53
|||||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcccgg 82
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcccg 52
||||||||||||||||||||||||
Sbjct: 70 ctgaagtgtttgggggaactcccg 93
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 tgctgaagtgtttgggggaactcc 50
||||||||||||||||||||||||
Sbjct: 58 tgctgaagtgtttgggggaactcc 81
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 tgctgaagtgtttgggggaactcc 50
||||||||||||||||||||||||
Sbjct: 63 tgctgaagtgtttgggggaactcc 86
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gctgaagtgtttgggggaactcc 50
|||||||||||||||||||||||
Sbjct: 64 gctgaagtgtttgggggaactcc 86
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 tgaagtgtttgggggaactcccgggtt 56
||||||||||||||||||||| |||||
Sbjct: 85 tgaagtgtttgggggaactcctgggtt 111
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 tgctgaagtgtttgggggaactc 49
|||||||||||||||||||||||
Sbjct: 59 tgctgaagtgtttgggggaactc 81
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 72 ctgaagtgtttgggggaactcc 93
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 73 ctgaagtgtttgggggaactcc 94
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 69 ctgaagtgtttgggggaactcc 90
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tggagttcccttgaccacttca 167
||||||||||||||||||||||
Sbjct: 9 tggagttcccttgaccacttca 30
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 69 ctgaagtgtttgggggaactcc 90
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;AC146854.19/50848-50757 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 24 ccttgctgaagtgtttgggggaactcccgg 53
||||| ||||| ||||||||||||||||||
Sbjct: 57 ccttgttgaagcgtttgggggaactcccgg 86
>RF00451;mir-395;AC212301.1/130419-130493 4081:Solanum
lycopersicum
Length = 75
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 27 tgctgaagtgtttgggggaactcccgggtt 56
||||||||||||||||| ||||| ||||||
Sbjct: 43 tgctgaagtgtttggggaaactcgcgggtt 72
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcc 82
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 62 ctgaagtgtttgggggaactcc 83
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcc 79
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgaagtgtttgggggaactcc 50
||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcc 79
