miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 60
Query: 66 ctgaagtgtttgggggaactcctgggttgac 96
|||||||||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgggttgac 91
>RF00451;mir-395;AC194694.1/86392-86482 4081:Solanum lycopersicum
Length = 91
Score = 151 bits (76), Expect = 2e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagccttg 60
Query: 66 ctgaagtgtttgggggaactcctg 89
|||||||||||| |||||||||||
Sbjct: 61 ctgaagtgtttgtgggaactcctg 84
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 65
||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||
Sbjct: 1 gtgtttcctagagttcccttgatcacttcatgatggcttactttgttgtttgaagcctta 60
Query: 66 ctgaagtgtttgggggaactcc 87
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcc 82
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 12 cctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttgctgaag 71
||||||||||||||||||||||||| |||| |||||| | |||| || || ||||||||
Sbjct: 6 cctagagttcccttgaccacttcattagggattacttcgttgtttgatgctctgctgaag 65
Query: 72 tgtttgggggaactcctggg 91
||||||||||||||||||||
Sbjct: 66 tgtttgggggaactcctggg 85
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 65
|||||||||||||||||||||||| |||||| ||||||||||| |||| || || |
Sbjct: 1 gtgttccctagagttcccttgaccgcttcattagggcttacttcactgtttgatgctcta 60
Query: 66 ctgaagtgtttgggggaactcctggg 91
||||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctggg 86
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 89.7 bits (45), Expect = 6e-18
Identities = 79/90 (87%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgt-- 63
|||||||||||||||||||||||| |||||| |||| |||||||| |||| || || |
Sbjct: 1 gtgttccctagagttcccttgaccgcttcattagggtttactttgttgtttgatgcatgc 60
Query: 64 --tgctgaagtgtttgggggaactcctggg 91
||||||||||||||||||||||||||||
Sbjct: 61 cctgctgaagtgtttgggggaactcctggg 90
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 73/84 (86%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 7 tgttccctagagttcccttgaccacttcatgagggct---tactttgatgttagaagcgt 63
||||||||||||||||||||||| |||||| |||| | ||||||| |||| || ||
Sbjct: 2 tgttccctagagttcccttgaccgcttcattagggttaactactttgttgtttgatgccc 61
Query: 64 tgctgaagtgtttgggggaactcc 87
||||||||||||||||||||||||
Sbjct: 62 tgctgaagtgtttgggggaactcc 85
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 65.9 bits (33), Expect = 9e-11
Identities = 77/91 (84%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactt---tgatgttagaagcg 62
|||||| | |||||| |||||||||||||||||||| ||| || | |||| || ||
Sbjct: 1 gtgttctcaagagtttccttgaccacttcatgagggtttaattacttcgtgtttgatgcc 60
Query: 63 ttgctgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||||||||| ||||
Sbjct: 61 ttgctgaagtgtttgggggaactcctaggtt 91
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggcttactttgatgttagaagcgttg 65
||||||||| |||||||||||||| |||||| |||| |||||| ||| | || ||
Sbjct: 1 gtgttccctggagttcccttgaccgcttcattagggtttacttcatcgtttcatgccctg 60
Query: 66 ctgaagtgtttgggggaactc 86
|||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactc 81
>RF00451;mir-395;AC145120.1/105818-105725 50514:Solanum demissum
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ctagagttcccttgaccacttcatgaggg 41
|||||||||||||||||||||||||||||
Sbjct: 8 ctagagttcccttgaccacttcatgaggg 36
>RF00451;mir-395;AC145120.1/105463-105372 50514:Solanum demissum
Length = 92
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgaggg 41
|||||| | |||||||||||||||||||||||||||
Sbjct: 1 gtgttctcgagagttcccttgaccacttcatgaggg 36
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcat 36
|||| ||||||||||||||||||||||||||
Sbjct: 1 gtgtcccctagagttcccttgaccacttcat 31
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 69 ctgaagtgtttgggggaactcctgg 93
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgggtt 111
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 agagttcccttgaccacttcatgaggg 41
|||||||||||||||||||||||||||
Sbjct: 10 agagttcccttgaccacttcatgaggg 36
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttca 35
|||| |||||||||||||||||||||||||
Sbjct: 1 gtgtcccctagagttcccttgaccacttca 30
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcctgg 88
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 72 ctgaagtgtttgggggaactcctgg 96
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 73 ctgaagtgtttgggggaactcctgg 97
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 69 ctgaagtgtttgggggaactcctgg 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttca 35
|||| ||||||||||||||||| |||||||
Sbjct: 1 gtgtcccctagagttcccttgagcacttca 30
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcctgg 88
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 62 ctgaagtgtttgggggaactcctgg 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttca 35
|||| ||||||||||||| |||||||||||
Sbjct: 1 gtgtcccctagagttcccctgaccacttca 30
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcctgg 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttca 35
|||| ||||||||||||||||| |||||||
Sbjct: 1 gtgtcccctagagttcccttgatcacttca 30
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcctgg 82
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcctgg 90
|||||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcctgg 82
>RF00451;mir-395;AC145120.1/105640-105548 50514:Solanum demissum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttcatgagggctta 45
|||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1 gtgttcccgagagttcc-ttgaccacttcatgaggactta 39
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gctgaagtgtttgggggaactcc 87
|||||||||||||||||||||||
Sbjct: 64 gctgaagtgtttgggggaactcc 86
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||| ||||||
Sbjct: 91 tgaagtgtttgggggaactcttgggtt 117
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||| ||||||
Sbjct: 86 tgaagtgtttgggggaactcttgggtt 112
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||| ||||||
Sbjct: 87 tgaagtgtttgggggaactcttgggtt 113
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcctgggtt 93
|||||||||||||||||||| ||||||
Sbjct: 74 tgaagtgtttgggggaactcttgggtt 100
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcc 87
||||||||||||||||||||||
Sbjct: 63 ctgaagtgtttgggggaactcc 84
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcc 87
||||||||||||||||||||||
Sbjct: 70 ctgaagtgtttgggggaactcc 91
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcc 87
||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcc 86
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgttccctagagttcccttgaccacttca 35
|||| ||||||||||||||||| |||||||
Sbjct: 1 gtgtcccctagagttcccttgaacacttca 30
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgaagtgtttgggggaactcc 87
||||||||||||||||||||||
Sbjct: 58 ctgaagtgtttgggggaactcc 79
