miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagggagcacaacccagcatcag-ctaaagactctttgcttttcttggg 68
|||||||||||||| ||||||||||| |||| || ||||||| ||||||| ||| |||||
Sbjct: 1 ttgacagaagagagagagcacaacccggcattaggctaaagagtctttgcctttgttggg 60
Query: 69 agtgtgctctctcttcttctgtcat 93
||||||||||||| |||||||||||
Sbjct: 61 agtgtgctctctcctcttctgtcat 85
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaacccagcatcagc 44
||||||||||||| ||||||||||||||| ||||
Sbjct: 2 tgacagaagagagagagcacaacccagcaccagc 35
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaacccagcatcagc 44
||||||||||||| ||||||||||| ||| ||||
Sbjct: 2 tgacagaagagagagagcacaacccggcagcagc 35
