miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttgtataagggtatacctatgccggtgc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggcaatttgtataagggtatacctatgccggtgc 60
Query: 70 gtgctcacctctctttctgtcag 92
|||||||||||||||||||||||
Sbjct: 61 gtgctcacctctctttctgtcag 83
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 93.7 bits (47), Expect = 4e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttgtataagggtatacctatgccggtgc 69
|||||||||||||||||||||| |||||||| |||||| | || |||||| ||| |||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaa-ttgtatgaaggcatacctttgcgggtgc 59
Query: 70 gtgctcacctctctttctgtcag 92
|||||||| ||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtcag 82
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 71.9 bits (36), Expect = 2e-12
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttgtat-aagggtatacctatgccggtg 68
|||||||||||||||||||||| |||||||| |||||| | | ||||| ||| ||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaa-ttgtatggaagccataccactgcaggtg 59
Query: 69 cgtgctcacctctctttctgtcag 92
||||||||||||||||||||||||
Sbjct: 60 cgtgctcacctctctttctgtcag 83
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttgtataagggtatacctatgccggtgc 69
|||||||||||||||||||||||||||||| | | ||| | ||| || ||| ||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggcactgt-tatgtgtcgataactttgcgtgtgc 59
Query: 70 gtgctcacctctctttctgtcag 92
|||||||||||||||||||||||
Sbjct: 60 gtgctcacctctctttctgtcag 82
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacatgc 34
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacatgc 25
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 ggtgcgtgctcacctctctttctgtca 91
||||||||||||| |||||||||||||
Sbjct: 57 ggtgcgtgctcacttctctttctgtca 83
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttg 44
|||||||||||||||||||||| ||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacaaaggcaatttg 35
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacatg 33
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacatg 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacatgcaggcaatttgtataagggtatacctatgccggtgc 69
|||||||||||||||||||||| |||||| ||||||||| ||| | | ||| |||
Sbjct: 1 ctgacagaagagagtgagcacacagaggcaa-ttgtataagtttatgcttttgcttttgc 59
Query: 70 gtgctcacctctctttctgtcag 92
||||||| ||||||||||||||
Sbjct: 60 gtgctcatttctctttctgtcag 82
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacat 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacat 23
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacat 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacat 23
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 tgcgtgctcacctctctttctgtcag 92
||||||||||| ||||||||||||||
Sbjct: 92 tgcgtgctcacttctctttctgtcag 117
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 tgcgtgctcacctctctttctgtcag 92
||||||||||| ||||||||||||||
Sbjct: 99 tgcgtgctcacttctctttctgtcag 124
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
