miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 161 bits (81), Expect = 2e-39
Identities = 88/89 (98%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 60
Query: 70 ctctgtgtgc-ttactccctatctgtcac 97
|||||||||| ||||||||||||||||||
Sbjct: 61 ctctgtgtgctttactccctatctgtcac 89
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 74/87 (85%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 69
|||||||| |||||||||||| |||||| || |||||||||| || ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt-ctgttcttgcatggg---tccatgcttgaag 56
Query: 70 ctctgtgtgcttactccctatctgtca 96
||||| ||||| |||| ||||||||||
Sbjct: 57 ctctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatg 51
||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 69
|||||||| |||||||||||| |||||| | |||| || |||| ||||| || || ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtac-tttcgtgtatgatgtttc-attctcgaag 58
Query: 70 ctctgtgtgcttactccctatctgtcac 97
|| |||||||| |||| |||||||||||
Sbjct: 59 ctatgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 76/92 (82%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcat----gaagtttctatgctt 65
|||||||| |||||||||||| |||||| |||||||||| |||| || ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 66 gaagctctgtgtgcttactccctatctgtcac 97
|||||| |||||||| |||| ||||| |||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtcac 92
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 59 tatgcttgaagctctgtgtgcttactccctatctgtcac 97
|||||||||| || ||||||||||||| |||||||||||
Sbjct: 57 tatgcttgaaactatgtgtgcttactctctatctgtcac 95
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaagc 70
||||||| |||||||||||| ||||| |||||||||||| | ||| ||||| |||||
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgcatggatgttccatgctcgaagc 61
Query: 71 tctgtgtgct 80
|||| |||||
Sbjct: 62 tctgcgtgct 71
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 60 atgcttgaagctctgtgtgcttactccctatctgtcac 97
|||||||||||| ||||||||||||| || ||||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtcac 98
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 50.1 bits (25), Expect = 6e-06
Identities = 75/88 (85%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 69
|||||||| |||||||||||| |||||| | |||| |||||||| ||| ||||| ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtac-tttcctgcatgaa--ttc-atgctcgaag 56
Query: 70 ctctgtgtgcttactccctatctgtcac 97
| || |||||||||| |||||||||||
Sbjct: 57 ccttgcgtgcttactctctatctgtcac 84
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 69
|||||||| |||||||||||| |||| ||||||| |||||| |||| ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacatatgg-tcttttcaagcatgatgtttacatgcttgaag 59
Query: 70 ctctgtgtgcttac-tccctatctgtcac 97
|| || ||||| || || |||||||||||
Sbjct: 60 ctatgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 76/90 (84%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 10 gtgacagaggagagtgagcactcatggttcttttcttgcatgaag-tttctatgcttgaa 68
|||||||| |||||||||||| ||||| | |||||| |||||| | ||| |||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatgg-tgttttctagcatgatgttttacatgcttgaa 59
Query: 69 gctctgtgtgcttact-ccctatctgtcac 97
|| |||||||| ||| | |||||||||||
Sbjct: 60 actatgtgtgctcactgctctatctgtcac 89
