miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AM454957.2/557-754 29760:Vitis vinifera
Length = 198
Score = 385 bits (194), Expect = e-106
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1 gggtttatgggagctcctttacgctccagttctgaaaggagatgatggtatccacagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggtttatgggagctcctttacgctccagttctgaaaggagatgatggtatccacagctg 62
Query: 61 ctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaactatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaactatgg 122
Query: 121 gtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaagggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaagggagc 182
Query: 181 tctcataacccttc 194
||||||||||||||
Sbjct: 183 tctcataacccttc 196
>RF00638;MIR159;CAAP02000074.1/111494-111682 29760:Vitis vinifera
Length = 189
Score = 107 bits (54), Expect = 6e-23
Identities = 115/134 (85%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 58 ctgctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaacta 117
|||||||||||||| ||||||||||||| | |||| | ||| |||| | |||||||
Sbjct: 50 ctgctggttcatgaaaacctatggctgcattctctatactgaaattttgtatacaaacta 109
Query: 118 tgggtgtgcatgacctcggagaagtggttgccttgatcttt-ctggccttggagtgaagg 176
||||| ||||||| || ||||||||| |||| || |||||| ||||||||||||||||||
Sbjct: 110 tgggtttgcatgaacttggagaagtgtttgcttttatcttttctggccttggagtgaagg 169
Query: 177 gagctctcataacc 190
||||||||||||||
Sbjct: 170 gagctctcataacc 183
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 135 ggagaagtggttgccttgatctttctggccttggagtgaagggagctc 182
||||| |||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 134 ggagatgtggttgccttgatctttttggtcttggggtgaagggagctc 181
>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
Length = 196
Score = 60.0 bits (30), Expect = 1e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 110 gcaaactatgggtgtgcatgacctcggagaagtggttgccttgatctttctggccttgga 169
|||| ||||||||| ||||||| | ||||| | || | | ||||||||||||| |||||
Sbjct: 110 gcaagctatgggtgagcatgacttgggagatgagggtactttgatctttctggtattgga 169
Query: 170 gtgaagggagctct 183
||||||||||||||
Sbjct: 170 gtgaagggagctct 183
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 150 ttgatctttctggccttggagtgaagggagctct 183
||||||||| ||| |||||||||||||||||||
Sbjct: 155 ttgatctttttggtattggagtgaagggagctct 188
