miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaagaagcttgtcaa 48
|||||||||||||||||||||||| |||||||||||||
Sbjct: 4 tgcctggctccctgaatgccatctgagaagcttgtcaa 41
>RF00247;mir-160;AASG02006050.1/4122-4208 3988:Ricinus communis
(castor bean)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 tcctagttggcatcagaggagtcatgcagg 93
|||||||||||||||||||||||| |||||
Sbjct: 57 tcctagttggcatcagaggagtcaagcagg 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctgaatgccatctaagaag 40
||||||||||||||||| |||||| ||||||||
Sbjct: 1 atctgcctggctccctggatgccaactaagaag 33
>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 3 ctgcctggctccctgaatgccatc 26
>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 3 ctgcctggctccctgaatgccatc 26
