miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 8 acatgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcg 60
Query: 68 gatggcgtgcgaggagccatgcatgc 93
||||||||||||||||||||||||||
Sbjct: 61 gatggcgtgcgaggagccatgcatgc 86
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 9 catgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcgg 68
|||||||||||||||||||||||| ||||||| | | |||| |||| ||||| | ||
Sbjct: 2 catgcctggctccctgtatgccatctgcaaagcgcccatcaggagtggtggccttggtgg 61
Query: 69 atggcgtgcgaggagccatgcatgc 93
|||||||||||||||||||||||||
Sbjct: 62 atggcgtgcgaggagccatgcatgc 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcgga 69
|||||||||||||||||||||||||||| || ||||| | || | | ||||||| |||
Sbjct: 3 atgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtgga 62
Query: 70 tggcgtgcgaggagccatgcat 91
|||||| ||||||||||||||
Sbjct: 63 tggcgtatgaggagccatgcat 84
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 65.9 bits (33), Expect = 9e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcggat 70
||||||||||||||||||||||||||| || ||| ||||| || | | |||| || ||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagccca-ccgagcatcgctggcctccgtggat 62
Query: 71 ggcgtgcgaggagccatgcat 91
||||| ||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcat 83
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcggat 70
||||||||||||||||||||||||| |||| || | || | ||||| | || ||| |||
Sbjct: 4 tgcctggctccctgtatgccatttgtgaagttcatcagaagcttggtggtctccgcagat 63
Query: 71 ggcgtgcgaggagccatgcatgc 93
||| ||| |||||||||||||||
Sbjct: 64 ggcatgcaaggagccatgcatgc 86
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccatttgcaaag 40
|||||||||||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccatttgcaaag 33
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgca 37
|||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgca 30
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcaaagtcca 44
||||||||||||||||||||||||| | ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgtagagtcca 37
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttg 35
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gcggatggcgtgcgaggagccatgcatg 92
|||||||||||||||||||||| |||||
Sbjct: 78 gcggatggcgtgcgaggagccaagcatg 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 gcggatggcgtgcgaggagccatgcatg 92
|||||||||||||||||||||| |||||
Sbjct: 108 gcggatggcgtgcgaggagccaagcatg 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 catgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 catgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccat 32
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccat 25
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgca 37
|||||||||||||| ||||||||||||
Sbjct: 4 tgcctggctccctgcatgccatttgca 30
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 2 atgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gcggatggcgtgcgaggagcca 86
||||||||||||||||||||||
Sbjct: 75 gcggatggcgtgcgaggagcca 96
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgc 36
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
