miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 236 bits (119), Expect = 5e-62
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgcagatttgcctcacttttcccccttttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgcagatttgcctcacttttcccccttttttct 60
Query: 61 tctttactcccaccaccgcccacaggcttgcacgtgctccccttctccaacatgggttc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctttactcccaccaccgcccacaggcttgcacgtgctccccttctccaacatgggttc 119
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya (papaya)
Length = 86
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaacatgggttc 119
||||||||||||||||||||||||||||||||
Sbjct: 55 ttgcacgtgctccccttctccaacatgggttc 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgca 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 agctccctgttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaacatgggttc 119
||||||||||||||||||||||||||||||||
Sbjct: 55 ttgcacgtgctccccttctccaacatgggttc 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 87 cttgcacgtgctccccttctccaacatgggtt 118
||||||||||||||||||||||||||||||||
Sbjct: 52 cttgcacgtgctccccttctccaacatgggtt 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgca 31
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaacatgggttc 119
||||||||||||||||||||||||||||||||
Sbjct: 64 ttgcacgtgctccccttctccaacatgggttc 95
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgca 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaacatgggttc 119
|||||||||||||||||||||||||||||||
Sbjct: 54 tgcacgtgctccccttctccaacatgggttc 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcag 32
|||| ||||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgcag 32
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaacatgg 115
||||||||||||||||||||||||||||
Sbjct: 81 ttgcacgtgctccccttctccaacatgg 108
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaacatgggtt 118
||||||||||||| |||||||||||||||||
Sbjct: 55 ttgcacgtgctccacttctccaacatgggtt 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgca 31
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggcacgtgcaga 33
||||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgcaga 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaacatgg 115
||||||||||||||||||||| |||||
Sbjct: 189 tgcacgtgctccccttctccaccatgg 215
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ctccttgttggagaagcagggcacgtgca 31
|||| ||||||||||||||||||||||||
Sbjct: 3 ctccatgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max (soybean)
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 ttgcacgtgctccccttctccaaca 112
|||||||||||||||||||||||||
Sbjct: 81 ttgcacgtgctccccttctccaaca 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggcacgtgca 31
||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC226040.1/15354-15265 4641:Musa acuminata
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ccttgttggagaagcagggcacgtgcaga 33
|||||||||||||||||| ||||||||||
Sbjct: 5 ccttgttggagaagcaggtcacgtgcaga 33
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ccttgttggagaagcagggcacgtgca 31
||||| |||||||||||||||||||||
Sbjct: 5 ccttgctggagaagcagggcacgtgca 31
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa Indica
Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaacatgg 115
||||||||||||||||||||| |||||
Sbjct: 89 tgcacgtgctccccttctccaccatgg 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
|||||||||||||||||| |||||||
Sbjct: 6 cttgttggagaagcagggtacgtgca 31
