miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ttgagcaagatggagaagcagggcacgtgcattactagctcatgcaccacaaaccaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgagcaagatggagaagcagggcacgtgcattactagctcatgcaccacaaaccaataa 60
Query: 61 tcttttgctcgagttagactcttgcttgctgctttga 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttttgctcgagttagactcttgcttgctgctttga 97
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 ttgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 ttgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 83.8 bits (42), Expect = 4e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 3 gagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgca 46
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcattactagct 40
||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattactagct 40
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 ttgagcaagatggagaagcagggcacgtgcattactagctcatg 44
|||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1 ttgaacaagatggagaagcagggcacgtgcaatactaactcatg 44
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcattact 36
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcattactagctcatgcac 47
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcatgcac 39
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatg 44
|||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcattactagctcatg 44
|||||||||||||||||||||||||| | ||| ||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcatg 44
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 agcaagatggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||||
Sbjct: 4 agcatgatggagaagcagggcacgtgca 31
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcattactag 38
||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattcctag 38
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
