miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 123 bits (62), Expect = 5e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 aagctcttgatggagaagcagggcacgtgcagttcacaaattctaatctgctctgcacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctcttgatggagaagcagggcacgtgcagttcacaaattctaatctgctctgcacgt 60
Query: 61 gc 62
||
Sbjct: 61 gc 62
Score = 123 bits (62), Expect = 5e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 55 gcacgtgcagttcacaaattctaatctgctctgcacgtgctccccttctccaacatgggt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gcacgtgcagttcacaaattctaatctgctctgcacgtgctccccttctccaacatgggt 82
Query: 115 tc 116
||
Sbjct: 83 tc 84
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya (papaya)
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggttc 116
|||||||||||||||||||||||||||||||
Sbjct: 56 tgcacgtgctccccttctccaacatgggttc 86
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggttc 116
|||||||||||||||||||||||||||||||
Sbjct: 56 tgcacgtgctccccttctccaacatgggttc 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 aagctcttgatggagaagcagggcacgtgca 31
||||||||| |||||||||||||||||||||
Sbjct: 1 aagctcttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggttc 116
|||||||||||||||||||||||||||||||
Sbjct: 65 tgcacgtgctccccttctccaacatgggttc 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgatggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggttc 116
|||||||||||||||||||||||||||||||
Sbjct: 89 tgcacgtgctccccttctccaacatgggttc 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgatggagaagcagggcacgtgcag 32
|||| ||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcag 32
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggtt 115
||||||||||||||||||||||||||||||
Sbjct: 54 tgcacgtgctccccttctccaacatgggtt 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 agctcttgatggagaagcagggcacgtgca 31
|||||||| |||||||||||||||||||||
Sbjct: 2 agctcttgctggagaagcagggcacgtgca 31
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgg 112
|||||||||||||||||||||||||||
Sbjct: 82 tgcacgtgctccccttctccaacatgg 108
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 agctcttgatggagaagcagggcacgtgca 31
|||||||| |||||||||||||||||||||
Sbjct: 2 agctcttgctggagaagcagggcacgtgca 31
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgggtt 115
|||||||||||| |||||||||||||||||
Sbjct: 56 tgcacgtgctccacttctccaacatgggtt 85
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 cttgatggagaagcagggcacgtgc 30
|||||||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 80 ctgctctgcacgtgctccccttctccaacatgg 112
|||| |||||||||||||||||||||| |||||
Sbjct: 183 ctgcactgcacgtgctccccttctccaccatgg 215
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcag 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcag 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max (soybean)
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaaca 109
||||||||||||||||||||||||
Sbjct: 82 tgcacgtgctccccttctccaaca 105
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgatggagaagcagggcacgtgca 31
||||||||||||||||||||||||
Sbjct: 8 tgatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 1 gatggagaagcagggcacgtgca 23
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tcttgatggagaagcagggcacgtgca 31
||||| |||||||||||||||||||||
Sbjct: 5 tcttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa Indica
Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 tgcacgtgctccccttctccaacatgg 112
||||||||||||||||||||| |||||
Sbjct: 89 tgcacgtgctccccttctccaccatgg 115
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgatggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgca 31
>RF00647;MIR164;AC226040.1/15354-15265 4641:Musa acuminata
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 ctctgcacgtgctccccttctccaacatgg 112
||||||||||| ||| ||||||||||||||
Sbjct: 57 ctctgcacgtgatcctcttctccaacatgg 86
