miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02002239.1/46319-46198 29760:Vitis vinifera
Length = 122
Score = 238 bits (120), Expect = 1e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagaggc 61
Query: 61 tataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 121
>RF00645;MIR169_2;AARH01007603.1/205939-205816 3694:Populus
trichocarpa
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccgg 31
||||||||||||||||||||||||||
Sbjct: 7 gaatgcagccaagaatgatttgccgg 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 accctggcaagttgtccttggctacatttg 114
|||| |||||||||| ||||||||||||||
Sbjct: 88 accccggcaagttgttcttggctacatttg 117
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatag 44
||||||| |||||||||| |||| ||||||||||| | ||||||
Sbjct: 2 gagtggagtgcagccaaggatgacttgccggaattcacatatag 45
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatag 44
||||||| |||||||||| |||| ||||||||||| | ||||||
Sbjct: 2 gagtggagtgcagccaaggatgacttgccggaattcacatatag 45
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 tggcaagttgtccttggctacat 111
|||||||||||||||||||||||
Sbjct: 48 tggcaagttgtccttggctacat 70
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 ggcaagttgtccttggctacatt 112
|||||||||||||||||||||||
Sbjct: 57 ggcaagttgtccttggctacatt 79
>RF00645;MIR169_2;AC186138.3/99196-99295 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 agtggaatgcagccaagaatgatttgccgg 31
||||||||||||||||| |||||||||||
Sbjct: 3 agtggaatgcagccaagggtgatttgccgg 32
