miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60
Query: 61 gtcacgcacggagggttatccttgactcctttagctcctct 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcacgcacggagggttatccttgactcctttagctcctct 101
>RF00645;MIR169_2;AM446014.2/2924-2824 29760:Vitis vinifera
Length = 101
Score = 77.8 bits (39), Expect = 2e-14
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 3 ggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactggt 62
||||||||||| |||||||||||||| | |||||||||| ||||||||| |||||||||
Sbjct: 3 ggtggaattgaaccaaggatggcttgtcatcctttgtcattatttgaggttttaactggt 62
Query: 63 cacgcacggagggttatccttgactcctttagctcctct 101
|| ||| | | ||| |||||| || ||||||||||||
Sbjct: 63 catgcatgacgagttgtccttgccttatttagctcctct 101
>RF00645;MIR169_2;AM433342.2/4348-4244 29760:Vitis vinifera
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 43 tatttgaggcattaactggtcacgcacggagggttatccttgactcctttagctcctct 101
|||||||||| ||||||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 47 tatttgaggctttaactggtcatgcacggctggttatccctgtctcctttagctcctct 105
>RF00645;MIR169_2;CAAP02002239.1/29912-29811 29760:Vitis vinifera
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 43 tatttgaggcattaactggtcacgcacggagggttatccttgactcctttagctcctct 101
||||||| || ||||||||||| ||| |||| |||||||||| |||||||||||||||
Sbjct: 44 tatttgaagctttaactggtcatgcatggagagttatccttgtttcctttagctcctct 102
>RF00645;MIR169_2;CAAP02000146.1/169306-169201 29760:Vitis
vinifera
Length = 106
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 gggtggaattgagccaaggatggcttgccgtc 33
|||| |||||||||||||||||||||||||||
Sbjct: 3 gggtcgaattgagccaaggatggcttgccgtc 34
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatggcttgccg 31
|||||||||||||||||||| |||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgt 32
|||||||||||||| |||||||| ||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgt 32
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatggcttgccg 31
||||||||||||||||||| |||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||||||||| |||||||| |||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||| |||||||||||||| |||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||||| |||||||||||| |||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||||||||| |||||||| |||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
