miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM433342.2/4348-4244 29760:Vitis vinifera
Length = 105
Score = 184 bits (93), Expect = 2e-46
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccgtcatttttcagttggtatttgaggcttta 60
||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagccagggatgactgaccatcatttttcagttggtatttgaggcttta 60
Query: 61 actggtcatgcacggctggttatccctgtctcctttagctcctct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actggtcatgcacggctggttatccctgtctcctttagctcctct 105
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 87.7 bits (44), Expect = 3e-17
Identities = 90/105 (85%), Gaps = 4/105 (3%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccgtcatttttcagttggtatttgaggcttta 60
||||||||||||||||||||||| || |||||| ||| ||| |||||||||| |||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgtcctttgtca----ctatttgaggcatta 56
Query: 61 actggtcatgcacggctggttatccctgtctcctttagctcctct 105
|||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 57 actggtcacgcacggagggttatccttgactcctttagctcctct 101
>RF00645;MIR169_2;CAAP02002239.1/29912-29811 29760:Vitis vinifera
Length = 102
Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 40 cagttggtatttgaggctttaactggtcatgcacggctggttatccctgtctcctttagc 99
|||||||||||||| |||||||||||||||||| || ||||||| ||| |||||||||
Sbjct: 37 cagttggtatttgaagctttaactggtcatgcatggagagttatccttgtttcctttagc 96
Query: 100 tcctct 105
||||||
Sbjct: 97 tcctct 102
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccgtcattt 37
|||||||||| ||||||||||||||| |||| |||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgactggccg 31
||||||||||||||||||||||| ||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccgt 32
|||||||||||||| ||||||||||| |||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgt 32
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatgactggccg 31
|||||||||||||||||||||| ||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccg 31
|||||||||||||| ||||||||||| ||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccg 31
|||||||| ||||||||||||||||| ||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgactggccg 31
|||||||||||||| ||||||||||| ||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM446014.2/2924-2824 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tatttgaggctttaactggtcatgca 72
||||||||| ||||||||||||||||
Sbjct: 43 tatttgaggttttaactggtcatgca 68
>RF00645;MIR169_2;CAAP02000146.1/169306-169201 29760:Vitis
vinifera
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 2 gggtggaattgagccaaggatgactggccgtcat 35
|||| ||||||||||||||||| || ||||||||
Sbjct: 3 gggtcgaattgagccaaggatggcttgccgtcat 36
