miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 121 bits (61), Expect = 2e-27
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaagctttaac 60
|||||||| |||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccgccatctgcmgcaagcattgaagctttaac 60
Query: 61 tgggcatgcacggctagttattcttggctcatttggcccctct 103
|||||||| || || ||||||||||||||||| |||||||||
Sbjct: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttg 38
||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgtcctttg 38
>RF00645;MIR169_2;CAAP02000146.1/169306-169201 29760:Vitis vinifera
Length = 106
Score = 65.9 bits (33), Expect = 9e-11
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 2 gggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaag--ctttaa 59
|||| ||||||||||||||||| ||||||||| | |||| |||| ||| || |||||
Sbjct: 3 gggtcgaattgagccaaggatggcttgccgtcatctgcagcaagagttggagacttttaa 62
Query: 60 ctgggcatgcacggctagttattcttggctcatttggccc 99
||| || ||||||| |||| || |||||||||||||||||
Sbjct: 63 ctgtgcgtgcacggttagtcatccttggctcatttggccc 102
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgt 32
|||||||||||||| |||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgt 32
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttgca 40
|||||||||| |||||||||||||||||||| | ||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccggcatttgca 40
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatgacttgccg 31
|||||||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccg 31
|||||||||||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccg 31
|||||||||||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||| ||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||| ||||||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccg 31
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 attgagccaaggatgacttgccg 31
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 attgagccaaggatgacttgccg 31
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM433342.2/4348-4244 29760:Vitis vinifera
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgact 26
||||||||||||||||| ||||||||
Sbjct: 1 agggtggaattgagccagggatgact 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 48 ttgaagctttaactgggcatgcacggctagttat 81
|||| ||||||||||| ||||||||||| |||||
Sbjct: 50 ttgaggctttaactggtcatgcacggctggttat 83
