miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 tgagtggaatagagccaaggatgacttgccggcaactgcagcaaggcatagggtttaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagtggaatagagccaaggatgacttgccggcaactgcagcaaggcatagggtttaact 60
Query: 61 ggtcataactggcaagcatctgaggctctatttcaccctct 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtcataactggcaagcatctgaggctctatttcaccctct 101
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 125 bits (63), Expect = 1e-28
Identities = 91/99 (91%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gtggaatagagccaaggatgacttgccggcaactgcagcaaggca-tagggtttaactgg 62
||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccggcagctgcagcaaggcattaaggtttaactgg 63
Query: 63 tcataactggcaagcatctgaggctctatttcaccctct 101
|||||||||||||||| |||||||| |||||||||||
Sbjct: 64 ctataactggcaagcatccgaggctctgtttcaccctct 102
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 gtggaatagagccaaggatgacttgccggca 34
|||||||||||||||||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcaact 37
|||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggcaact 39
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tggaatagagccaaggatgacttgccgg 32
|||||| |||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 gaatagagccaaggatgacttgccggca 34
||||| ||||||||||||||||||||||
Sbjct: 8 gaatacagccaaggatgacttgccggca 35
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggcaactgcagcaag 45
|||||||||||||||||||| || |||| |||||
Sbjct: 12 gagccaaggatgacttgccgccatctgcmgcaag 45
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcaa 35
|||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggcaa 37
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcaa 35
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcaa 35
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggca 34
|||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggca 34
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggca 34
|||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcaa 35
|||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggcaa 38
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcaa 35
|||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggcaa 38
>RF00645;MIR169_2;CAAP02000146.1/169306-169201 29760:Vitis
vinifera
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 gaatagagccaaggatgacttgccggcaactgcagcaag 45
|||| |||||||||||| ||||||| || ||||||||||
Sbjct: 8 gaattgagccaaggatggcttgccgtcatctgcagcaag 46
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 53 agccaaggatgacttgccggca 32
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 gagtggaatagagccaaggatgacttgccg 31
||||||| | ||||||||||||||||||||
Sbjct: 2 gagtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 agtggaatagagccaaggatgacttgccgg 32
|||| ||| |||||||||||||||||||||
Sbjct: 3 agtgaaatggagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggc 33
||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggc 33
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggca 33
