miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 163 bits (82), Expect = 6e-40
Identities = 104/110 (94%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
|||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| |||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagg-catgcagggg 59
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cttttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 109
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 151 bits (76), Expect = 2e-36
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
|||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
|||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 61 cctttagcyatgtgttaccggcaagttgacttgactctgtttggccctct 110
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 147 bits (74), Expect = 3e-35
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
|||||||||| |||||||||||||||||||| ||||||||||| ||||| | ||| |||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
