miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 206 bits (104), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctttagcyatgtgttaccggcaagttgacttgactctgtttggccctct 110
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 163 bits (82), Expect = 6e-40
Identities = 104/110 (94%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagg-catgcagggg 59
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
| ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 60 cttttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 109
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagtcaaggatgacttgccg 31
||||||||||| ||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgt 32
|||||||||||||| |||||||| ||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgt 32
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagtcaaggatgacttgccg 31
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
