miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 2 gaaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagagccgtaaaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagagccgtaaaga 60
Query: 62 acgatctctgattgagccgcgccaatatcactttctgctaa 102
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgatctctgattgagccgcgccaatatcactttctgctaa 101
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttacgaa--gagccgtaaagaacga 65
||||||||||||||||||||||||||||||||||||||| | | |||||| ||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacga 66
Query: 66 tctctgattgagccgcgccaatatcacttt 95
|||| |||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcacttt 96
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 93.7 bits (47), Expect = 4e-19
Identities = 81/92 (88%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttac----gaagagccgtaaagaac 63
||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatac 66
Query: 64 gatctctgattgagccgcgccaatatcacttt 95
|||||| |||||||||||||||||||||||||
Sbjct: 67 gatctcagattgagccgcgccaatatcacttt 98
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 91.7 bits (46), Expect = 2e-18
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttacgaagagc--cgtaaagaacga 65
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 66
Query: 66 tctctgattgagccgcgccaatatcactt 94
|||| ||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 69.9 bits (35), Expect = 6e-12
Identities = 77/89 (86%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatccgaagacggatttacgaagag---ccgtaaagaacga 65
|||||||||||||||||||||||||||||| ||||||| | ||| ||||| |||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttac-acgagtgaaagtaaaatccga 59
Query: 66 tctctgattgagccgcgccaatatcactt 94
|||| ||||||||||||||||||||||||
Sbjct: 60 tctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 3 aaagtaagcgatgttggtgaggttcaatccgaagacggatttac 46
|||| |||||||||||||||||||||||| |||||| |||||||
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatctgaagacagatttac 45
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 cgatctctgattgagccgcgccaatatcactttc 96
||||||| || |||||||||||||||||||||||
Sbjct: 65 cgatctcagaatgagccgcgccaatatcactttc 98
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 gatctctgattgagccgcgccaatatcacttt 95
|||||| |||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 ctgattgagccgcgccaatatcactt 94
||||||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
|||||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 75 tctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgcgccaatatc 102
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatcac 92
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatcac 91
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tctctgattgagccgcgccaatatcac 92
||||||||||||||| |||||||||||
Sbjct: 76 tctctgattgagccgtgccaatatcac 102
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tctctgattgagccgcgccaatatcac 92
||||||||||||||| |||||||||||
Sbjct: 79 tctctgattgagccgtgccaatatcac 105
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgcgccaatatc 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatccga 34
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 67 gattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatcac 87
