miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 2 tgaagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaatgtaaaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaatgtaaaaa 60
Query: 62 ctgatctcagattgagccgcgccaatatcacttttctgtgg 102
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgatctcagattgagccgcgccaatatcacttttctgtgg 101
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatctgaagattgatttatgct--tgaatgtaaaaactgat 66
||||||||||||||||||||||| ||||| |||||| | |||| |||||| | |||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccgat 60
Query: 67 ctcagattgagccgcgccaatatcactt 94
||||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 75.8 bits (38), Expect = 1e-13
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatctgaagattgatttatgcttgaat--gtaaaaactga 65
|||||||||||||||||||||||| ||||| |||||||||| | ||||| | ||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 66
Query: 66 tctcagattgagccgcgccaatatcactt 94
|||||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 aagaaagcgatgttggtgaggttcaatctgaaga 37
||||||||||||||||||||||||||||||||||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatctgaaga 36
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttt 95
||||||||| ||||||||||||||||||||||
Sbjct: 66 gatctcagaatgagccgcgccaatatcacttt 97
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttttc 97
||||||||||||||||||||||||||||||||||
Sbjct: 65 gatctcagattgagccgcgccaatatcacttttc 98
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcactttt 96
|||||||||||||||||||||||||||||||||
Sbjct: 67 gatctcagattgagccgcgccaatatcactttt 99
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttt 95
|||||| |||||||||||||||||||||||||
Sbjct: 63 gatctctgattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ctcagattgagccgcgccaatatcac 92
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 tcagattgagccgcgccaatatcac 92
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcactt 94
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
