miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 3 agaaggtggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaaggtggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcct 60
Query: 63 ttaatctgattgagccgtgccaatatcatcatgttcact 101
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaatctgattgagccgtgccaatatcatcatgttcact 99
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 141 bits (71), Expect = 2e-33
Identities = 84/87 (96%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 agaaggtggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcct 62
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaaagtggggatgttggaatggctcaatcaaatcaaatctcccaa-agttttgggtcct 59
Query: 63 ttaatctgattgagccgtgccaatatc 89
|||||||||||||||||||||||||||
Sbjct: 60 ttaatctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 99.6 bits (50), Expect = 7e-21
Identities = 77/86 (89%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 10 ggggatgttggaatggctcaatcaaatcaaatctcccaag-----ggttttgggtccttt 64
|||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtctttt 67
Query: 65 aatctgattgagccgtgccaatatca 90
||| ||||||||||||||||||||||
Sbjct: 68 aatttgattgagccgtgccaatatca 93
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/84 (86%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 11 gggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtcctttaa 66
|||||||||| |||||||||||| ||||||||||||| | | ||||||| |||||
Sbjct: 1 gggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtcttttaa 60
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatca 84
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 72
|||||||| | |||||||||||| |||| || ||| |||| | |||||||||||||||
Sbjct: 11 gatgttgggacggctcaatcaaaccaaagatctcaatggtt--gagtcctttaatctgat 68
Query: 73 tgagccgtgccaatatcat 91
|||||||||||||||||||
Sbjct: 69 tgagccgtgccaatatcat 87
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 25 gctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattgagccgtgcca 84
|||||||||||||||| | | ||| |||| |||| |||| |||||||||||||||||||
Sbjct: 14 gctcaatcaaatcaaagcactcaatggtt--gggttctttcatctgattgagccgtgcca 71
Query: 85 atatc 89
|||||
Sbjct: 72 atatc 76
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 ctttaatctgattgagccgtgccaatatc 89
|||||||||||||||||||||||||||||
Sbjct: 61 ctttaatctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tttaatctgattgagccgtgccaatatcat 91
|||| |||||||||||||||||||||||||
Sbjct: 76 tttagtctgattgagccgtgccaatatcat 105
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 ctttaatctgattgagccgtgccaatatca 90
||||| ||||||||||||||||||||||||
Sbjct: 62 ctttagtctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatca 101
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatca 104
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatca 118
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatca 81
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatca 93
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 66 tgattgagccgtgccaatatca 87
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatca 123
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 103 tgattgagccgtgccaatatca 124
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatca 133
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
