miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctcatccttgaaaagtttggcagagataacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tattgccgatgcagcatcatcaagattctcatccttgaaaagtttggcagagataacatc 51
Query: 61 accaccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 accaccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 1
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 77.8 bits (39), Expect = 3e-14
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 64 accgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 110
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 47 accgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 1
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||| ||||||||||||||||||||||||
Sbjct: 157 tattgctgatgcagcatcatcaagattctca 127
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 65 ccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 110
|||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 46 ccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 1
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 139 tattgccgatgcagcatcatcaagattctca 109
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 2 attgccgatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||||||||
Sbjct: 113 attgccgatgcagcatcatcaagattctcat 83
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 160 tattgccgatgcagcatcatcaagattctca 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 68 tgcatttgcatgtgaatcttgatgatgc 95
||||||||||||||||||||| ||||||
Sbjct: 43 tgcatttgcatgtgaatcttggtgatgc 16
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 68 tgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 110
|||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 43 tgcatttgcatgtgaatcttgatggtgctacatcagcaaacaa 1
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 151 atgcagcatcatcaagattctca 129
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattctca 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 72 tttgcatgtgaatcttgatgatgctaca 99
||||||||||||||||||||||||||||
Sbjct: 39 tttgcatgtgaatcttgatgatgctaca 12
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattctca 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 75 gcatgtgaatcttgatgatgctaca 99
|||||||||||||||||||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctaca 12
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 71 atttgcatgtgaatcttgatgatgctaca 99
|||||||||||||||||||||||||||||
Sbjct: 40 atttgcatgtgaatcttgatgatgctaca 12
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||||
Sbjct: 211 tattgtcgatgcagcatcatcaagattctca 181
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 gccgatgcagcatcatcaagattctcat 32
||||||||||||||||||||||||||||
Sbjct: 167 gccgatgcagcatcatcaagattctcat 140
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctcatc 33
|||||||||||||||||||||||||| ||||
Sbjct: 130 ttgccgatgcagcatcatcaagattcccatc 100
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||| ||||||||||||||||||||||||
Sbjct: 88 tattgctgatgcagcatcatcaagattctca 58
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctcatc 33
|||| ||||||||||||||||||||||||||
Sbjct: 118 ttgctgatgcagcatcatcaagattctcatc 88
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctcatc 33
|||| ||||||||||||||||||||||||||
Sbjct: 108 ttgctgatgcagcatcatcaagattctcatc 78
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 2 attgccgatgcagcatcatcaagattctca 31
||||||| ||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattctca 81
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
||||||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattc 154
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctcat 32
|||| |||||||||||||||||||||||||
Sbjct: 139 ttgctgatgcagcatcatcaagattctcat 110
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctcat 32
|||| |||||||||||||||||||||||||
Sbjct: 164 ttgctgatgcagcatcatcaagattctcat 135
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctcatc 33
||||||||||||||||||||||||||
Sbjct: 130 gatgcagcatcatcaagattctcatc 105
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||
Sbjct: 106 gatgcagcatcatcaagattctcat 82
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctcat 76
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcatc 33
|||||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctcatc 77
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||
Sbjct: 139 gatgcagcatcatcaagattctcat 115
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||
Sbjct: 102 gatgcagcatcatcaagattctcat 78
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 78 tgtgaatcttgatgatgctacatgcgcaaaca 109
||||||||||||||||||| ||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 199 tattgccgctgcagcatcatcaagattc 172
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 142 tattgccgctgcagcatcatcaagattc 115
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 121 gatgcagcatcatcaagattctca 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 71 atttgcatgtgaatcttgatgatgct 96
||||| ||||||||||||||||||||
Sbjct: 40 atttgaatgtgaatcttgatgatgct 15
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 120 gatgcagcatcatcaagattctca 97
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 154 tattgccgctgcagcatcatcaagattc 127
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 151 gatgcagcatcatcaagattctca 128
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 78 tgtgaatcttgatgatgctacatgcgcaaaca 109
||||||||||||||||||| ||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 138 tattgccgctgcagcatcatcaagattc 111
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctcat 32
|||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctcat 90
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 ccgatgcagcatcatcaagattc 28
|||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattc 209
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
|||| |||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
|||| |||||||||||||||||||||
Sbjct: 121 ttgctgatgcagcatcatcaagattc 96
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctca 31
||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100
