miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctcaaccccaaaacttgaggcagcgaagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattctcaaccccaaaacttgaggcagcgaagatggc 59
Query: 61 atcgctgccgcgccgggctttcgcatgtgaatcttgatgatgctacacctgcaaacaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atcgctgccgcgccgggctttcgcatgtgaatcttgatgatgctacacctgcaaacaa 1
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 212 bits (107), Expect = 8e-55
Identities = 117/119 (98%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctcaaccccaaaacttgaggcagcgaagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattctcaaccccaaaacttgaggcagcgaagatggc 60
Query: 61 atcgctgccgc-gccgggctttcgcatgtgaatcttgatgatgctacacctgcaaacaa 118
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59 atcgctgccgctgccgggcttttgcatgtgaatcttgatgatgctacacctgcaaacaa 1
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctcaaccccaaaac 41
|||||| |||||||||||||||||||||||||| |||||||
Sbjct: 88 tattgctgatgcagcatcatcaagattctcaacaccaaaac 48
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctacacctgcaaacaa 118
||||||||||||||||||||||||||| ||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctacacccgcaaacaa 1
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||| ||||||||||||||||||||||||
Sbjct: 157 tattgctgatgcagcatcatcaagattctca 127
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 139 tattgccgatgcagcatcatcaagattctca 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctacacctgcaaacaa 118
|||||||||||||||||||||| |||| ||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctccacccgcaaacaa 1
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 160 tattgccgatgcagcatcatcaagattctca 130
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||||||
Sbjct: 110 tattgccgatgcagcatcatcaagattctca 80
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctaca 107
|||||||||||||||||||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctaca 12
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 2 attgccgatgcagcatcatcaagattctca 31
||||||||||||||||||||||||||||||
Sbjct: 113 attgccgatgcagcatcatcaagattctca 84
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 85 atgtgaatcttgatgatgctacacctgcaaacaa 118
|||||||||||||||||||| |||||||||||||
Sbjct: 34 atgtgaatcttgatgatgctgcacctgcaaacaa 1
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 121 gatgcagcatcatcaagattctca 98
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 85 atgtgaatcttgatgatgctacacctgcaaacaa 118
|||||||||||||||||||| |||||||||||||
Sbjct: 34 atgtgaatcttgatgatgctgcacctgcaaacaa 1
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 120 gatgcagcatcatcaagattctca 97
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctacacctgcaaacaa 118
|||||||||||||| ||||||| |||||||||||||
Sbjct: 36 gcatgtgaatcttggtgatgctgcacctgcaaacaa 1
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 151 gatgcagcatcatcaagattctca 128
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctacacc 109
|||||||||||||||||||||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctacacc 10
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||||
Sbjct: 211 tattgtcgatgcagcatcatcaagattctca 181
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 gccgatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||
Sbjct: 167 gccgatgcagcatcatcaagattctca 141
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 attgccgatgcagcatcatcaagattctcaa 32
||||||| |||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattctcaa 80
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
||||||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattc 105
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
||||||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattc 154
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 85 atgtgaatcttgatgatgctacacctgcaa 114
|||||||||||||||||||| |||||||||
Sbjct: 34 atgtgaatcttgatgatgctgcacctgcaa 5
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctca 31
|||| ||||||||||||||||||||||||
Sbjct: 118 ttgctgatgcagcatcatcaagattctca 90
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctca 31
|||| ||||||||||||||||||||||||
Sbjct: 139 ttgctgatgcagcatcatcaagattctca 111
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 86 tgtgaatcttgatgatgctacacctgcaaacaa 118
||||||||||||||||||| |||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccaccagcaaacaa 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctcaa 32
|||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctcaa 99
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctca 31
|||| ||||||||||||||||||||||||
Sbjct: 164 ttgctgatgcagcatcatcaagattctca 136
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattctca 31
|||| ||||||||||||||||||||||||
Sbjct: 108 ttgctgatgcagcatcatcaagattctca 80
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 199 tattgccgctgcagcatcatcaagattc 172
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 106 gatgcagcatcatcaagattctca 83
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 142 tattgccgctgcagcatcatcaagattc 115
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 154 tattgccgctgcagcatcatcaagattc 127
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 83 gcatgtgaatcttgatgatgctacacctgcaaacaa 118
||||||||||||||||| ||||||| | ||||||||
Sbjct: 36 gcatgtgaatcttgatggtgctacatcagcaaacaa 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 151 atgcagcatcatcaagattctca 129
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgatgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 138 tattgccgctgcagcatcatcaagattc 111
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 139 gatgcagcatcatcaagattctca 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 atgtgaatcttgatgatgctacacctgcaa 114
||||||||||||||| |||| |||||||||
Sbjct: 34 atgtgaatcttgatggtgctgcacctgcaa 5
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 130 gatgcagcatcatcaagattctca 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 84 catgtgaatcttgatgatgctacacctgcaa 114
|||||||||||||||| |||| |||||||||
Sbjct: 35 catgtgaatcttgatggtgctgcacctgcaa 5
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 102 gatgcagcatcatcaagattctca 79
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 gatgcagcatcatcaagattctca 31
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctca 79
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 ccgatgcagcatcatcaagattc 28
|||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattc 209
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
|||| |||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 ttgccgatgcagcatcatcaagattc 28
|||| |||||||||||||||||||||
Sbjct: 121 ttgctgatgcagcatcatcaagattc 96
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctca 31
||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctca 91
