miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 274 bits (138), Expect = 3e-73
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgat 62
Query: 61 ggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgatga 122
Query: 121 tgctgcagcggcaataaa 138
||||||||||||||||||
Sbjct: 123 tgctgcagcggcaataaa 140
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 73.8 bits (37), Expect = 5e-13
Identities = 114/135 (84%), Gaps = 6/135 (4%)
Strand = Plus / Plus
Query: 9 atggagcatcatcaagattcacaag---tattgagactcagtgcgtggtggtgatggtga 65
||||||||||||||||||||||||| |||| | || |||| |||||| ||||||||
Sbjct: 11 atggagcatcatcaagattcacaagctttattagggct-agtgtgtggtgatgatggtgg 69
Query: 66 cttttg-tggtcccttccta-cactccgatggctctttgatgtgggaatcttgatgatgc 123
|||||| ||||||||| | || ||| || || |||||| ||||||||||||||||||
Sbjct: 70 cttttggtggtccctttttttcaatccaatagccctttgaattgggaatcttgatgatgc 129
Query: 124 tgcagcggcaataaa 138
|||||||||||||||
Sbjct: 130 tgcagcggcaataaa 144
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 98 ctttgatgtgggaatcttgatgatgctgcagcggcaataaa 138
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 116 ctttgatatgggaatcttgatgatgctgcagcggcaataaa 156
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaa 32
|||||| |||||||||||||||||||||||||
Sbjct: 3 gtttgctgatggagcatcatcaagattcacaa 34
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaataaa 138
|||||||||||||||||||||||||||||||||
Sbjct: 169 tgggaatcttgatgatgctgcagcggcaataaa 201
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaa 32
||||||||||||||||||||||||||||||||
Sbjct: 3 gtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
|||||||||||||||||||||||||||
Sbjct: 84 gaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggc 132
|||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 3 gtttgcgggtggagcatcatcaagattcaca 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| ||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| ||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 95 gctctttgatgtgggaatcttgatgatgctgcag 128
|||||||||| || ||||||||||||||||||||
Sbjct: 89 gctctttgatttgagaatcttgatgatgctgcag 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaag 33
|||||| | ||||||||||||||||||||||||
Sbjct: 3 gtttgctggtggagcatcatcaagattcacaag 35
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| ||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcggcaataaa 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
||||||| ||| |||||||||||||||||||
Sbjct: 3 gtttgcgcatgtagcatcatcaagattcaca 33
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 102 tgggaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 151 tgggaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaa 32
||||||||||| |||||||| |||||||||||
Sbjct: 3 gtttgcggatgcagcatcatgaagattcacaa 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgca 127
||||||||||||||||||||||
Sbjct: 103 tgggaatcttgatgatgctgca 124
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaata 136
||||||||||||||||||| ||||||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaata 136
||||||||||||||||||| ||||||||
Sbjct: 91 gaatcttgatgatgctgcatcggcaata 118
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 121 tgtgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 119 tgtgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 156 tgtgggaatcttgatgatgctgca 179
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 204 tgtgggaatcttgatgatgctgca 227
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||| |||||||
Sbjct: 87 gaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gtgggaatcttgatgatgctgca 127
|||||||||||||||||||||||
Sbjct: 92 gtgggaatcttgatgatgctgca 114
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcacaa 32
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||||| |||||
Sbjct: 94 gaatcttgatgatgctgcagctgcaat 120
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| || |||||||||||||||||||
Sbjct: 3 gtttgcgggtgtagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| | ||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| |||| |||||
Sbjct: 144 gaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgca 127
||||||||||||||||||||||
Sbjct: 99 tgggaatcttgatgatgctgca 120
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgca 127
||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgca 86
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| | ||||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaataaa 90
