miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 385 bits (194), Expect = e-106
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1 tgtggaagaaggagctctctttagtccagtccgagacagcttcaaggctgatacgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgtggaagaaggagctctctttagtccagtccgagacagcttcaaggctgatacgtggct 61
Query: 61 gctgactcgttgcttcaagaactcatcacataggcctggaaaagatggatggttttttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gctgactcgttgcttcaagaactcatcacataggcctggaaaagatggatggttttttga 121
Query: 121 tccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctc 181
Query: 181 ccttgtattccaca 194
||||||||||||||
Sbjct: 182 ccttgtattccaca 195
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 107 bits (54), Expect = 6e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 114 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 173
||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 111 tttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttggactgaag 170
Query: 174 ggagctccct 183
||||||||||
Sbjct: 171 ggagctccct 180
>RF00638;MIR159;AP009725.1/8577-8386 34305:Lotus japonicus
Length = 192
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 118 tgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaaggg 175
|||||||||||||| |||||||| |||||| || |||||| | ||||||||||||||
Sbjct: 117 tgatccaacgatgcgggagctgcattcagtcatcactgtcatggcttggactgaaggg 174
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 114 tttttgatccaacgatgcaggagctgcgttcagttatg--gctgtcacgtcttggactga 171
|||||||| |||||||||||||||| || ||| ||| || ||| |||||||||||||
Sbjct: 149 tttttgatgcaacgatgcaggagctatgtacagctatattgccgtcgcgtcttggactga 208
Query: 172 agggagctccct 183
||||||||||||
Sbjct: 209 agggagctccct 220
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 ggctgctgactcgttgcttcaagaactcatca 88
|||||||||||||||| |||||||||||||||
Sbjct: 58 ggctgctgactcgttgattcaagaactcatca 89
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 gaagaaggagctctctttagtccagtccgag 35
||||||||||||||||| |||||||||||||
Sbjct: 6 gaagaaggagctctcttcagtccagtccgag 36
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctt 188
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 158 cttggactgaagggagctccctt 180
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 152 cttggactgaagggagctccctt 174
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 191 cttggactgaagggagctccctt 213
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctt 188
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccctt 183
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccctt 173
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccctt 184
||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccctt 184
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccct 183
||||||||||||||||||||||
Sbjct: 160 cttggactgaagggagctccct 181
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctccctt 184
||||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccctt 178
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 148 tcttggactgaagggagctccc 169
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctccc 168
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tcttggactgaagggagctccc 182
||||||||||||||||||||||
Sbjct: 149 tcttggactgaagggagctccc 170
