miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 347 bits (175), Expect = 3e-95
Identities = 182/183 (99%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 1 ttacattgaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacattgaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctg 60
Query: 61 ccgactc-attcatccaaatactgtgttaaggactacccagtaaatgattgaatgatgcg 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgactccattcatccaaatactgtgttaaggactacccagtaaatgattgaatgatgcg 120
Query: 120 ggagacaaattggatcttaagctccctgtgcttggactgaagggagctcccttcactgca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagacaaattggatcttaagctccctgtgcttggactgaagggagctcccttcactgca 180
Query: 180 atc 182
|||
Sbjct: 181 atc 183
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 206 bits (104), Expect = 8e-53
Identities = 156/173 (90%), Gaps = 9/173 (5%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactca 68
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67
Query: 69 ttcatccaaatactgtgtt-aaggac--------tacccagtaaatgattgaatgatgcg 119
||||||||||||||| ||| |||||| |||||||||||||| |||||||||||
Sbjct: 68 ttcatccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatgcg 127
Query: 120 ggagacaaattggatcttaagctccctgtgcttggactgaagggagctccctt 172
|||||||||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 128 ggagacaaattgaatcctaagcttcctgtacttggactgaagggagctccctt 180
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 145 bits (73), Expect = 2e-34
Identities = 140/162 (86%), Gaps = 4/162 (2%)
Strand = Plus / Plus
Query: 10 agagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcat 69
|||||||||||||||||||| |||||||||| || || | ||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 70 tcatccaaatactgtgttaaggactacccagtaaatgattgaatgatgcgggagacaaat 129
|||||||||| ||| || | || |||||||||| |||||||||||||||||||||
Sbjct: 70 tcatccaaatgctg----aatgtgtattcagtaaatgagtgaatgatgcgggagacaaat 125
Query: 130 tggatcttaagctccctgtgcttggactgaagggagctccct 171
|| |||||||||| ||||| |||||||||||||||||||||
Sbjct: 126 tgtatcttaagcttcctgttattggactgaagggagctccct 167
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 137 bits (69), Expect = 6e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactca 68
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 69 ttcatccaaatactgtgttaa 89
||||||||||||||| |||||
Sbjct: 69 ttcatccaaatactgagttaa 89
Score = 127 bits (64), Expect = 6e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 94 tacccagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttg 153
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct: 135 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttg 194
Query: 154 gactgaagggagctcccttcactg 177
||||||||||||||||||| ||||
Sbjct: 195 gactgaagggagctccctttactg 218
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 103 bits (52), Expect = 8e-22
Identities = 144/175 (82%), Gaps = 6/175 (3%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactca 68
||||||||||| ||| ||||||| || | | | | || |||| |||||| | ||||||||
Sbjct: 9 aagagagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactca 68
Query: 69 ttcatccaaatactgtgttaag------gactacccagtaaatgattgaatgatgcggga 122
||||||||||||||| |||| | || |||||||||||||| ||| ||||||||||
Sbjct: 69 ttcatccaaatactgagttatgagctaagattacccagtaaatgaatgagtgatgcggga 128
Query: 123 gacaaattggatcttaagctccctgtgcttggactgaagggagctcccttcactg 177
|||||||| ||||||| || ||| | |||||||||||||||||||||| ||||
Sbjct: 129 gacaaattaaatcttaaacttcctatcattggactgaagggagctccctttactg 183
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 93.7 bits (47), Expect = 8e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 102 aaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaag 161
|||||| ||||||||||||||||||||||| |||||||| | ||| | ||||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 162 ggagctccctt 172
|||||||||||
Sbjct: 174 ggagctccctt 184
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 71.9 bits (36), Expect = 3e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 100 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 159
|||||||| ||||||||||| ||||||||||| |||| | || || ||||||||||||
Sbjct: 110 gtaaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactga 169
Query: 160 agggagctccct 171
||||||||||||
Sbjct: 170 agggagctccct 181
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcagtccactcatgg 36
|||||||||||||||| ||||||||||||
Sbjct: 8 gaagagagctttcttcggtccactcatgg 36
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 65.9 bits (33), Expect = 2e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
||||||||| | |||||||||||||||||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactc 67
Query: 68 attca 72
|||||
Sbjct: 68 attca 72
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 101 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 160
||||||| |||||||||||| |||||||||||||| | || || || ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 172
Query: 161 gggagctccctt 172
||||||||||||
Sbjct: 173 gggagctccctt 184
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcatccaaatac 81
|||||||| |||||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 101 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 160
||||||| |||||||||||| |||||||||||||| | || || || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 161 gggagctccct 171
|||||||||||
Sbjct: 171 gggagctccct 181
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcatccaaatac 81
|||||||| |||||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 101 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 160
||||||| |||||||||||| |||||||||||||| | || || || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 161 gggagctccct 171
|||||||||||
Sbjct: 171 gggagctccct 181
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 47 gattgaattagctgccgactcattcatccaaatac 81
|||| |||||||| |||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 61.9 bits (31), Expect = 3e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtggcagtagg-attgaattagctgccgactc 67
||||||||| ||||||||||||||||||| || | ||| |||||||| ||||||||||
Sbjct: 9 aagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgactc 68
Query: 68 attcatccaaa 78
|||||| ||||
Sbjct: 69 attcattcaaa 79
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctccctt 172
||||||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccctt 190
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctcccttc 173
|||||||||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctcccttc 184
Score = 50.1 bits (25), Expect = 1e-05
Identities = 62/72 (86%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtgg--cagtaggattgaattagctgccgact 66
|||||||||| ||||||||||||||||| ||| || || ||| ||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatggatgggttag-gggtttggattagctgccgact 67
Query: 67 cattcatccaaa 78
||||||| ||||
Sbjct: 68 cattcattcaaa 79
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 67
Query: 68 attca 72
|||||
Sbjct: 68 attca 72
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 67
Query: 68 attca 72
|||||
Sbjct: 68 attca 72
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctccctt 172
||||||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctt 188
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctccctt 172
||||||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccctt 174
Score = 46.1 bits (23), Expect = 2e-04
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gagctttcttcagtccactcatgggtggcagtaggatt-gaattagctgccgactcattc 71
|||||| ||||||||||||||||| || | ||| || | |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 72 atccaaa 78
|| ||||
Sbjct: 61 attcaaa 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 54.0 bits (27), Expect = 7e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 agagagctttcttcagtccactcatgggtggcagta--ggattgaattagctgccgactc 67
||||||||| |||||| |||||||||| | | || | || |||||||||||||||||||
Sbjct: 10 agagagcttccttcagcccactcatggataggagaaaggggttgaattagctgccgactc 69
Query: 68 attcat 73
||||||
Sbjct: 70 attcat 75
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctcc 169
|||||||||||||||||||||||||
Sbjct: 167 ctgtgcttggactgaagggagctcc 191
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 54.0 bits (27), Expect = 7e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcagtccactcatgggtggcagtagg-attgaattagctgccgactc 67
||||||||| |||||||||||||||||| | | | ||| ||||||||||||| |||||
Sbjct: 9 aagagagctctcttcagtccactcatggataggaaaaggttttgaattagctgctgactc 68
Query: 68 attcatccaaa 78
|||||| ||||
Sbjct: 69 attcattcaaa 79
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccctt 172
|||||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccctt 188
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 54.0 bits (27), Expect = 7e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
|||||||||| ||||||| |||||| | |||| || |||| ||||||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 73 tccaaat 79
|||||||
Sbjct: 61 tccaaat 67
Score = 52.0 bits (26), Expect = 3e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 109 tgaatgatgcgggag-acaaattggatcttaagctccctgtgcttggactgaagggagct 167
||||||| ||||||| |||| ||| |||| |||| ||||| ||||||||||||||||||
Sbjct: 108 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 167
Query: 168 cc 169
||
Sbjct: 168 cc 169
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcatccaaatac 81
|||||||| |||||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 tgaagagagctttcttcagtccactcatgg 36
|||||||||||| |||||||||||||||||
Sbjct: 7 tgaagagagcttccttcagtccactcatgg 36
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccctt 172
|||||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctccctt 181
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctcc 169
|||||||||||||||||||||||||
Sbjct: 155 ctgtgcttggactgaagggagctcc 179
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 145 ctgtgcttggactgaagggagctcc 169
|||||||||||||||||||||||||
Sbjct: 169 ctgtgcttggactgaagggagctcc 193
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcatccaaatactg 83
|||||||| |||| ||||||||||||||||||
Sbjct: 52 aattagcttccgaatcattcatccaaatactg 83
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 gtgcttggactgaagggagctcc 169
|||||||||||||||||||||||
Sbjct: 168 gtgcttggactgaagggagctcc 190
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 cttggactgaagggagctccctt 172
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 150 cttggactgaagggagctccct 171
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 150 cttggactgaagggagctccct 171
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 ttgaattagctgccgactcattcatccaaa 78
||||||||||||| ||||||||||| ||||
Sbjct: 30 ttgaattagctgctgactcattcattcaaa 59
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa
Japonica Group
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
|||||||||| |||||||||||||| | |||| ||||| || |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
Query: 68 at 69
||
Sbjct: 68 at 69
