miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 383 bits (193), Expect = e-106
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 1 agtggtttaagagagcttccttcagtccactcatggatgggttaggggtttggattagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtggtttaagagagcttccttcagtccactcatggatgggttaggggtttggattagct 60
Query: 61 gccgactcattcattcaaacacagtagaatggaaatggagtttactactgtgaatgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgactcattcattcaaacacagtagaatggaaatggagtttactactgtgaatgtgtg 120
Query: 121 aatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctcc 180
Query: 181 cttctactgtttt 193
|||||||||||||
Sbjct: 181 cttctactgtttt 193
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 190 bits (96), Expect = 5e-48
Identities = 170/192 (88%), Gaps = 7/192 (3%)
Strand = Plus / Plus
Query: 8 taagagagcttccttcagtccactcatggatgggttaggggtttggattagctgccgact 67
|||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 8 taagtgagcttcctccagtccactcatggatgagttaagggtttggattagctgccgact 67
Query: 68 cattcattcaaacacagtagaat----ggaaatggag--tttactactgtgaatgtgtga 121
|||||||||| ||||||||||| || | ||| |||||| ||||||||||||||
Sbjct: 68 cattcattcagacacagtagaaattaagggaccggatcttttactgctgtgaatgtgtga 127
Query: 122 atgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctccc 181
|||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 128 atgatgcgggagataa-tttcatcttcttcttgtctgtgcttggactgaagggagctccc 186
Query: 182 ttctactgtttt 193
|| |||||||||
Sbjct: 187 ttttactgtttt 198
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 174 bits (88), Expect = 3e-43
Identities = 153/174 (87%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 13 gagcttccttcagtccactcatggatgggttaggggtttggattagctgccgactcattc 72
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 73 attcaaacacagtagaatggaaatg---gagtttactactgtgaatgtgtgaatgatgcg 129
|||||||||||||||| | | || | | | ||| ||||||||||||||||| |||
Sbjct: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
Query: 130 ggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctccctt 183
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctccctt 174
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 147 bits (74), Expect = 7e-35
Identities = 155/178 (87%), Gaps = 8/178 (4%)
Strand = Plus / Plus
Query: 9 aagagagcttccttcagtccactcatggatgggttaggggtttggattagctgccgactc 68
||||||||||||||||||||||||||||| |||| ||||||||| |||| |||| |||||
Sbjct: 9 aagagagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactc 68
Query: 69 attcattcaaacacagtag--aatggaaatggagtt-tactactgtgaatgtgtgaatga 125
||| ||||||||||| ||| ||| |||| ||| | ||| |||||||||||||||||
Sbjct: 69 attgattcaaacacaatagacaat---tatggggttatgctattgtgaatgtgtgaatga 125
Query: 126 tgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctccctt 183
||| |||||| |||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct: 126 tgcaggaggtgaatttcttccttttct--tctttgcttggactgaagggagctccctt 181
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 127 bits (64), Expect = 6e-29
Identities = 159/188 (84%), Gaps = 7/188 (3%)
Strand = Plus / Plus
Query: 3 tggtttaagagagcttccttcagtccactcatggatgggttaggggtttggattagctgc 62
||||||||||||||| ||||||||||||||||| ||| | || |||| |||| ||||
Sbjct: 3 tggtttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgc 62
Query: 63 cgactcattcattcaaacacagtagaat--gga--aatggagtt---tactactgtgaat 115
||||||||||||||||||||| ||||| ||| | | || | | ||| |||||||
Sbjct: 63 cgactcattcattcaaacacactagaaaagggagcattaaagatagctgctattgtgaat 122
Query: 116 gtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaaggga 175
|||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 123 gtgtgaatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaaggga 182
Query: 176 gctccctt 183
||||||||
Sbjct: 183 gctccctt 190
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 119 bits (60), Expect = 1e-26
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 109 tgtgaatgtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggact 168
||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct: 114 tgtgaatgtgtgaatgatgcgggagctaaatttcatctttctcttgtctttgcttggact 173
Query: 169 gaagggagctcccttctactgttt 192
||||||||||||||| | ||||||
Sbjct: 174 gaagggagctcccttttgctgttt 197
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 99.6 bits (50), Expect = 1e-20
Identities = 130/153 (84%), Gaps = 4/153 (2%)
Strand = Plus / Plus
Query: 21 ttcagtccactcatggatgggttaggggtttggattagctgccgactcattcattcaaac 80
||||||||||| |||||||||| |||| |||| ||||||||| |||||||||||||||||
Sbjct: 1 ttcagtccacttatggatgggtaagggatttgaattagctgctgactcattcattcaaac 60
Query: 81 acagtaga--atggaaatggagtttactactgtgaatgtgtgaatgatgcgggaggtaaa 138
|| |||| || ||| | | || ||| |||||||||||||||||||||||| | |
Sbjct: 61 acgatagatcatagaacaagcg-ttgctatcgtgaatgtgtgaatgatgcgggagct-ta 118
Query: 139 tttcatccttttcttgtctgtgcttggactgaa 171
|||||||||| |||||||| |||||||||||||
Sbjct: 119 tttcatccttctcttgtctctgcttggactgaa 151
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 89.7 bits (45), Expect = 1e-17
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 105 ctactgtgaatgtgtgaatgatgcgggaggtaaatttc-atccttttcttgtctgtgctt 163
||||||||| ||||||||||||||||||| ||| |||| ||||| | ||| |||||||||
Sbjct: 117 ctactgtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgctt 176
Query: 164 ggactgaagggagctcc 180
|||||||||||||||||
Sbjct: 177 ggactgaagggagctcc 193
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 87.7 bits (44), Expect = 5e-17
Identities = 151/182 (82%), Gaps = 11/182 (6%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagtccactcatggatgggttag-gggtttggattagctgccgactc 68
|||||||||||||||| |||||||||||| || | ||| ||| |||||||||||||||
Sbjct: 10 agagagcttccttcagcccactcatggataggagaaaggggttgaattagctgccgactc 69
Query: 69 attcattcaaacac-agtagaat---ggaaatggag-----tttactactgtgaatgtgt 119
|||||||||| ||| ||||||| || |||||| ||| ||||||||| |||||
Sbjct: 70 attcattcaagcaccagtagaaaaaggggaatggatattcttttgctactgtgattgtgt 129
Query: 120 gaatgatgcgggaggtaaattt-catccttttcttgtctgtgcttggactgaagggagct 178
|||||||||||||| ||| ||| ||||| | || ||||||||||||||||||||||||
Sbjct: 130 gaatgatgcgggagataattttacatcccctctttttctgtgcttggactgaagggagct 189
Query: 179 cc 180
||
Sbjct: 190 cc 191
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya
(papaya)
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagtccactcatggatggg--ttaggggtttggattagctgccgact 67
|||||||||||||||| ||||||||||||||| | | ||| | | | ||||||||||||
Sbjct: 10 agagagcttccttcagcccactcatggatgggtatgaaggggtagaagtagctgccgact 69
Query: 68 cattcattca 77
||||||||||
Sbjct: 70 cattcattca 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 155 tctgtgcttggactgaagggagctcc 180
||||||||||||||||||||||||||
Sbjct: 154 tctgtgcttggactgaagggagctcc 179
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 61.9 bits (31), Expect = 3e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 110 gtgaatgtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactg 169
|||| ||||||||||||||||||| || ||| |||||| | || |||||| ||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
Query: 170 aagggagctcc 180
|||||||||||
Sbjct: 178 aagggagctcc 188
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 58.0 bits (29), Expect = 5e-08
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 105 ctactgtgaatgtgtgaatgatgcgggaggtaaattt-catccttttcttgtctgtgctt 163
||||||||| ||| ||||||||||||||| ||| ||| ||||| | | || || ||||||
Sbjct: 115 ctactgtgattgtatgaatgatgcgggagataattttgcatccctctttt-tccgtgctt 173
Query: 164 ggactgaagggagctcc 180
|||||||||||||||||
Sbjct: 174 ggactgaagggagctcc 190
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagtccactcatggatggg 41
|||||||||||||||| |||||||||||||||
Sbjct: 10 agagagcttccttcagcccactcatggatggg 41
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 156 ctgtgcttggactgaagggagctcccttc 184
|||||||||||||||||||||||||||||
Sbjct: 146 ctgtgcttggactgaagggagctcccttc 174
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 aagagagcttccttcagtccactcatgg 36
|||||||||| |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgg 36
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 56.0 bits (28), Expect = 2e-07
Identities = 65/75 (86%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 6 tttaagagagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccg 64
||||||||||||| ||||||||||||||||| ||| | || || || |||||||||||
Sbjct: 6 tttaagagagctttcttcagtccactcatgggtggcggta--ggatttaattagctgccg 63
Query: 65 actcattcattcaaa 79
|||||||||| ||||
Sbjct: 64 actcattcatccaaa 78
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 156 ctgtgcttggactgaagggagctccctt 183
|||| |||||||||||||||||||||||
Sbjct: 186 ctgtacttggactgaagggagctccctt 213
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/73 (86%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 8 taagagagcttccttcagtccactcatggatgggttag-gggtttggattagctgccgac 66
||||||||||| ||||||||||||||||| ||| ||| || || |||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtgg--tagtaggatttaattagctgccgac 64
Query: 67 tcattcattcaaa 79
|||||||| ||||
Sbjct: 65 tcattcatccaaa 77
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 156 ctgtgcttggactgaagggagctccctt 183
|||| |||||||||||||||||||||||
Sbjct: 153 ctgtacttggactgaagggagctccctt 180
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 159 tgcttggactgaagggagctccct 182
||||||||||||||||||||||||
Sbjct: 158 tgcttggactgaagggagctccct 181
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 aagagagcttccttcagtccactcatgg 36
|||||||| |||||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcatgg 36
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccctt 183
|||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccctt 183
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccctt 183
||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccctt 184
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 155 tctgtgcttggactgaagggagctcc 180
|||||| |||||||||||||||||||
Sbjct: 163 tctgtgtttggactgaagggagctcc 188
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccctt 183
||||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccctt 178
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 attagctgccgactcattcattcaaa 79
||||||||||||||||||||| ||||
Sbjct: 53 attagctgccgactcattcatccaaa 78
