miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AM434575.1/6317-6094 29760:Vitis vinifera
Length = 224
Score = 440 bits (222), Expect = e-123
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 1 gaacagctgaagagctccttttagtccaataaagagggctgaggggcggccagagctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaacagctgaagagctccttttagtccaataaagagggctgaggggcggccagagctgcc 61
Query: 61 atctcatgcacttggctatgcttattcttttctcaatcaattcggttcgagtatggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atctcatgcacttggctatgcttattcttttctcaatcaattcggttcgagtatggctgt 121
Query: 121 ggagtgacaaatgctaagtttagcctgatgcatgacatgggagcaactcctccgcacgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggagtgacaaatgctaagtttagcctgatgcatgacatgggagcaactcctccgcacgct 181
Query: 181 ttgcccactcattggactgaagggagctcccagggcagatct 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttgcccactcattggactgaagggagctcccagggcagatct 223
>RF00638;MIR159;AARH01009083.1/25466-25273 3694:Populus
trichocarpa
Length = 194
Score = 81.8 bits (41), Expect = 4e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 14 gctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 70
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 15 gctccttttagtccaataaggagggctgagaagcggctagagctgccatctcatgca 71
Score = 52.0 bits (26), Expect = 3e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 210
|||||||||||||| ||||| |||||| | | |||||||||||||||||||||
Sbjct: 128 tgggagcaactccttccgcatgctttgttcgcccattggactgaagggagctcc 181
>RF00638;MIR159;BABK01007609.1/868-644 34305:Lotus japonicus
Length = 225
Score = 54.0 bits (27), Expect = 9e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 136 aagtttagcctgatgcatgacatgggagcaactcctccgcacgctttgcccactcattgg 195
|||||| ||| | |||||| | ||||||||||||| |||| |||| ||||| ||||||
Sbjct: 138 aagtttggccaggtgcatggcgtgggagcaactccaccgcctgcttagcccagccattgg 197
Query: 196 actgaagggagctcc 210
| |||||||||||||
Sbjct: 198 attgaagggagctcc 212
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 12 gagctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgca 70
|||||||||| | ||||||| |||||||||| | ||| ||||||| |||||||||||
Sbjct: 13 gagctcctttcaatccaatacgaagggctgaggagaggcaagagctgtcatctcatgca 71
>RF00638;MIR159;EU526570.1/508-238 49390:Coffea canephora
Length = 271
Score = 54.0 bits (27), Expect = 9e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 34 gagggctgaggggcggccagagctgccatctcatgcacttggctatgctta 84
|||||||| || ||||| ||||||||||||||||||| | || ||||||||
Sbjct: 35 gagggctggggagcggctagagctgccatctcatgcattcggttatgctta 85
Score = 54.0 bits (27), Expect = 9e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcctc-cgcacgctttgcccactcattggactgaagggagctccc 211
|||||||||||||| ||| | |||||||| | ||||||||||||||||||||||
Sbjct: 205 tgggagcaactcctgtcgctcactttgcccgcccattggactgaagggagctccc 259
>RF00638;MIR159;ABIM01001714.1/11958-11721 3649:Carica papaya
(papaya)
Length = 238
Score = 52.0 bits (26), Expect = 3e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 158 tgggagcaactcct-ccgcacgctttgcccactcattggactgaagggagctcc 210
|||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 172 tgggagcaactccttccccatactttgcccgcccattggactgaagggagctcc 225
Score = 48.1 bits (24), Expect = 5e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 5 agctgaagagctccttttagtccaataaagagggctgaggggcggccagagctgccatct 64
|||||| |||||||||| || |||||| |||| ||||| | || |||||||||||||
Sbjct: 6 agctgaggagctcctttcagcccaatacggaggactgagatgtgggtagagctgccatct 65
Query: 65 catgcacttggctatgctta 84
|||||| |||||||||||
Sbjct: 66 catgcataaggctatgctta 85
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 48.1 bits (24), Expect = 5e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 12 gagctccttttagtccaataaagagggctgaggggcggcca-gagctgccatctcatgca 70
|||||||||| ||||||||| ||||||| || ||||| | ||||||||||||||||||
Sbjct: 13 gagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgca 72
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 184 cccactcattggactgaagggagctcc 210
||||| |||||||||||||||||||||
Sbjct: 160 cccacccattggactgaagggagctcc 186
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 189 tcattggactgaagggagctccc 211
|||||||||||||||||||||||
Sbjct: 154 tcattggactgaagggagctccc 176
