miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 278 bits (140), Expect = 2e-74
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatgagccatgatgaaaatgattgttgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatgagccatgatgaaaatgattgttgagt 64
Query: 61 tgaaaattttttctagcttgttttttgggtcatcattttgtgtgtgtggcgctatctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgaaaattttttctagcttgttttttgggtcatcattttgtgtgtgtggcgctatctatc 124
Query: 121 ctgagtttcacgggttcttc 140
||||||||||||||||||||
Sbjct: 125 ctgagtttcacgggttcttc 144
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatgagc 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatgagc 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtt 127
||||||||||||||||||||||
Sbjct: 93 gtggcgctatctatcctgagtt 114
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 69.9 bits (35), Expect = 9e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtttcacgggttcttc 140
|||||||||||||||||||||||||||||||||||
Sbjct: 97 gtggcgctatctatcctgagtttcacgggttcttc 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatga 35
||||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 atctgttaagctcaggagggatagcgccatgagc 37
||||||||||||||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgccatgagc 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtt 127
||||||||||||||||||||||
Sbjct: 97 gtggcgctatctatcctgagtt 118
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccat 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcca 32
||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatga 35
||||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcc 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtttcacgggttcttc 140
||||||||||| ||||||||||| || ||||||||
Sbjct: 80 gtggcgctatccatcctgagttttactggttcttc 114
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccat 33
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||
Sbjct: 9 tctgttaagctcaggagggatagcgcc 35
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 106 gtggcgctatctatcctgagtttcacgggttcttc 140
||||||||||| |||||||||||||| ||||||||
Sbjct: 88 gtggcgctatccatcctgagtttcacaggttcttc 122
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgttaagctcaggagggatagcgccatga 35
|||| |||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctaataagctcaggagggatagcgccatg 38
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatg 34
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
