miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctctctg 63
Query: 61 tggaggtgggcatactgccaaccaagctctgtt 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 tggaggtgggcatactgccaaccaagctctgtt 96
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcccatct 35
|||||||||||||||||||||||||||||| ||||
Sbjct: 4 acagagtttattggcattctgtccacctcctatct 38
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcc 30
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcc 30
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcc 30
||||||||| ||||||||||||||||||||
Sbjct: 4 acagagttttttggcattctgtccacctcc 33
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 61 tggaggtgggcatactgccaaccaagctctgtt 93
|||||||||||||||||||||| |||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgtt 97
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcc 30
|||||| |||||||||||||||||||||||
Sbjct: 4 acagagcttattggcattctgtccacctcc 33
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 61 tggaggtgggcatactgccaaccaagctctgtt 93
|||||||||||||||||||||| |||||||||
Sbjct: 99 tggaggtgggcatactgccaactgagctctgtt 131
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 acagagtttattggcattctgtccacctcc 30
|||||||| ||||||||||||||||||||
Sbjct: 4 acagagttctttggcattctgtccacctcc 33
