miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AM454446.1/19563-19456 29760:Vitis vinifera
Length = 108
Score = 198 bits (100), Expect = 1e-50
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 1 cagagccattttggcattctgtccacctccatatataccaattcttctgaattggcgccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 104 cagagccattttggcattctgtccacctccatatataccaattcttctgawttggcgccc 45
Query: 61 acaagcgtttggaggcggccaggatgccaaattggctctgta 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 acaagcgtttggaggcggccaggatgccaaattggctctgta 3
>RF00688;MIR394;AASG02008916.1/699-813 3988:Ricinus communis
(castor bean)
Length = 115
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 cagagccattttggcattctgtccacctccata 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 cagagccattttggcattctgtccacctccata 37
>RF00688;MIR394;CAAP02000005.1/40692-40598 29760:Vitis vinifera
Length = 95
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1 cagagccattttggcattctgtccacctccat 32
||||||||||||||||||||||||||||||||
Sbjct: 91 cagagccattttggcattctgtccacctccat 60
>RF00688;MIR394;ABIM01001091.1/17645-17548 3649:Carica papaya
(papaya)
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 cagagccattttggcattctgtccacctccat 32
|||||||| |||||||||||||||||||||||
Sbjct: 94 cagagccaatttggcattctgtccacctccat 63
>RF00688;MIR394;AC161863.21/83103-82984 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 attttggcattctgtccacctccatata 35
||||||||||||||||||||||||||||
Sbjct: 12 attttggcattctgtccacctccatata 39
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ttttggcattctgtccacctccat 32
||||||||||||||||||||||||
Sbjct: 12 ttttggcattctgtccacctccat 35
>RF00688;MIR394;BABK01003371.1/1268-1359 34305:Lotus japonicus
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 attttggcattctgtccacctcca 31
||||||||||||||||||||||||
Sbjct: 12 attttggcattctgtccacctcca 35
