miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctctaatgacttcccactgaagtg 63
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 6 ccctagagttcccctgaccacttcactggggatcttctgtaatgacttcctactgaagtg 65
Query: 64 tttgggggaactcctggtgtcat 86
|||||||||||||||||||||||
Sbjct: 66 tttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctctaatgacttcccactgaagtg 63
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 6 ccctagagttcccctgaccacttcactggggatcttctttaatgacttcctactgaagtg 65
Query: 64 tttgggggaactcctggtgtcat 86
|||||||||||||||||||||||
Sbjct: 66 tttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 107 bits (54), Expect = 2e-23
Identities = 76/83 (91%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctctaatga----cttcccactga 59
||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 6 ccctagagttcccctgaccacttcactggggatcttctctaatgaatgcctacgtactga 65
Query: 60 agtgtttgggggaactcctggtg 82
|||||||||||||||||||||||
Sbjct: 66 agtgtttgggggaactcctggtg 88
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 99.6 bits (50), Expect = 6e-21
Identities = 76/85 (89%), Gaps = 6/85 (7%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctctaat------gacttcccact 57
||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||
Sbjct: 6 ccctagagttcccttgaccacttcactggggaccttctctaattataatgacttcctact 65
Query: 58 gaagtgtttgggggaactcctggtg 82
|||||||||||||||||||||||||
Sbjct: 66 gaagtgtttgggggaactcctggtg 90
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 50 ttcccactgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttcccactgaagtgtttgggggaactcctggtgtcat 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggg 33
||||||||||||| ||| ||||||||||||
Sbjct: 6 ccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 73.8 bits (37), Expect = 3e-13
Identities = 72/84 (85%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctcta------atgacttcccact 57
||||||||||||| ||| ||||||||| |||| |||| ||| ||||||||| |||
Sbjct: 6 ccctagagttcccttgatcacttcactagggagcttcgctagttttaatgacttcctact 65
Query: 58 gaagtgtttgggggaactcctggt 81
||||||||||||||||||||||||
Sbjct: 66 gaagtgtttgggggaactcctggt 89
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 69.9 bits (35), Expect = 5e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttctctaatgacttcccactgaagtg 63
||||||||||||||||| ||||||| |||||||| | | | | |||| |||||||||
Sbjct: 6 ccctagagttcccctgagcacttcattggggatccttagttttcaattcctactgaagtg 65
Query: 64 tttgggggaactcctggtgtcat 86
|||||||||||||| ||||||||
Sbjct: 66 tttgggggaactcccggtgtcat 88
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 49 cttcccactgaagtgtttgggggaactcctggtgtcat 86
||||| ||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggtgtcat 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggg 33
||||||||||||| ||| ||||||||||||
Sbjct: 6 ccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 ttcccactgaagtgtttgggggaactcctggtgtcat 86
|||| ||||||||||||||||||||||||||||||||
Sbjct: 66 ttcctactgaagtgtttgggggaactcctggtgtcat 102
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 ttcccactgaagtgtttgggggaactcctggtgtcat 86
|||| ||||||||||||||||||||||||||||||||
Sbjct: 67 ttcctactgaagtgtttgggggaactcctggtgtcat 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggggatcttc 40
|||||||||||| |||| ||||||| |||||||||||
Sbjct: 6 ccctagagttcctctgagcacttcattggggatcttc 42
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 cactgaagtgtttgggggaactcctggtgtca 85
||||||||||||||||||||||||||||||||
Sbjct: 67 cactgaagtgtttgggggaactcctggtgtca 98
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 53 ccactgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||||| |||||||||
Sbjct: 46 ccactgaagtgtttgggggaactcttggtgtcat 79
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 49 cttcccactgaagtgtttgggggaactcctggtgtcat 86
||||| |||||||||||||||||||||| |||||||||
Sbjct: 49 cttccaactgaagtgtttgggggaactcttggtgtcat 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcactggg 33
||||||||||||| ||| ||||||||||||
Sbjct: 6 ccctagagttcccttgaacacttcactggg 35
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||| ||||||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtgtcat 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 ccctagagttcccctgaccacttcac 29
||||||||||||||||| ||||||||
Sbjct: 6 ccctagagttcccctgagcacttcac 31
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 53 ccactgaagtgtttgggggaactcctggtgtcat 86
||||||||||||||||||||||||| | ||||||
Sbjct: 67 ccactgaagtgtttgggggaactcccgatgtcat 100
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcctgg 80
||||||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 ccactgaagtgtttgggggaactcc 77
|||||||||||||||||||||||||
Sbjct: 60 ccactgaagtgtttgggggaactcc 84
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 54 cactgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||| |||| |||||||||
Sbjct: 68 cactgaagtgtttggggggactcttggtgtcat 100
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcctgg 84
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcctgg 89
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ccactgaagtgtttgggggaactc 76
||||||||||||||||||||||||
Sbjct: 46 ccactgaagtgtttgggggaactc 69
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctgg 80
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgg 108
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcc 77
|||||||||||||||||||||||
Sbjct: 64 actgaagtgtttgggggaactcc 86
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 cactgaagtgtttgggggaactc 76
|||||||||||||||||||||||
Sbjct: 82 cactgaagtgtttgggggaactc 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagttcccctgaccacttcactgggg 34
||||| ||||||||||||||||||||
Sbjct: 11 gagtttccctgaccacttcactgggg 36
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcc 77
|||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactcc 82
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcct 78
|||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcct 86
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactc 76
||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01010538.1/1971-1885 3649:Carica papaya
(papaya)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 ccactgaagtgtttgggggaac 74
||||||||||||||||||||||
Sbjct: 54 ccactgaagtgtttgggggaac 75
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactc 76
||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactc 80
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagttcccctgaccacttcactgggg 34
|||||||| |||||||||||||||||
Sbjct: 11 gagttcccttgaccacttcactgggg 36
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactc 76
||||||||||||||||||||||
Sbjct: 78 actgaagtgtttgggggaactc 99
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcc 77
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||| |||| ||||
Sbjct: 62 tgaagtgtttgggggaactcttggtatcat 91
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 56 tgaagtgtttgggggaactcttggtg 81
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 85 tgaagtgtttgggggaactcttggtg 110
