miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gccccctagagttcccctgaccacttcactggggatcttctgtaatgacttcctactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gccccctagagttcccctgaccacttcactggggatcttctgtaatgacttcctactgaa 62
Query: 61 gtgtttgggggaactcctggtgtcat 86
||||||||||||||||||||||||||
Sbjct: 63 gtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 163 bits (82), Expect = 4e-40
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 gccccctagagttcccctgaccacttcactggggatcttctgtaatgacttcctactgaa 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gccccctagagttcccctgaccacttcactggggatcttctttaatgacttcctactgaa 62
Query: 61 gtgtttgggggaactcctggtgtcat 86
||||||||||||||||||||||||||
Sbjct: 63 gtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 109 bits (55), Expect = 6e-24
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttctgtaatga----cttcctactg 58
||||||||||||||||||||||||||||||||||||||| |||||| || | |||||
Sbjct: 5 cccctagagttcccctgaccacttcactggggatcttctctaatgaatgcctacgtactg 64
Query: 59 aagtgtttgggggaactcctggtg 82
||||||||||||||||||||||||
Sbjct: 65 aagtgtttgggggaactcctggtg 88
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 101 bits (51), Expect = 1e-21
Identities = 77/86 (89%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttctgtaat------gacttcctac 56
|||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||
Sbjct: 5 cccctagagttcccttgaccacttcactggggaccttctctaattataatgacttcctac 64
Query: 57 tgaagtgtttgggggaactcctggtg 82
||||||||||||||||||||||||||
Sbjct: 65 tgaagtgtttgggggaactcctggtg 90
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttctgtaatgacttcctactgaagt 62
|||||||||||||||||| ||||||| |||||||| | || | | |||||||||||||
Sbjct: 5 cccctagagttcccctgagcacttcattggggatccttagttttcaattcctactgaagt 64
Query: 63 gtttgggggaactcctggtgtcat 86
||||||||||||||| ||||||||
Sbjct: 65 gtttgggggaactcccggtgtcat 88
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 83.8 bits (42), Expect = 3e-16
Identities = 74/85 (87%), Gaps = 6/85 (7%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttc------tgtaatgacttcctac 56
|||||||||||||| ||| ||||||||| |||| |||| | ||||||||||||||
Sbjct: 5 cccctagagttcccttgatcacttcactagggagcttcgctagttttaatgacttcctac 64
Query: 57 tgaagtgtttgggggaactcctggt 81
|||||||||||||||||||||||||
Sbjct: 65 tgaagtgtttgggggaactcctggt 89
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 75.8 bits (38), Expect = 8e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 49 cttcctactgaagtgtttgggggaactcctggtgtcat 86
||||||||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggtgtcat 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggg 33
|||||||||||||| ||| ||||||||||||
Sbjct: 5 cccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 50 ttcctactgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttcctactgaagtgtttgggggaactcctggtgtcat 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttc 40
||||||||||||| |||| ||||||| |||| ||||||
Sbjct: 5 cccctagagttcctctgagcacttcattgggaatcttc 42
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 50 ttcctactgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttcctactgaagtgtttgggggaactcctggtgtcat 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggggatcttc 40
||||||||||||| |||| ||||||| |||||||||||
Sbjct: 5 cccctagagttcctctgagcacttcattggggatcttc 42
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 ttcctactgaagtgtttgggggaactcctggtgtcat 86
|||| ||||||||||||||||||||||||||||||||
Sbjct: 63 ttcccactgaagtgtttgggggaactcctggtgtcat 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggg 33
|||||||||||||| ||| ||||||||||||
Sbjct: 5 cccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcctggtgtca 85
|||||||||||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactcctggtgtca 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttca 28
|||||||||||||| |||||||||||
Sbjct: 5 cccctagagttcccttgaccacttca 30
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 49 cttcctactgaagtgtttgggggaactcctggtgtcat 86
||||| |||||||||||||||||||||| |||||||||
Sbjct: 49 cttccaactgaagtgtttgggggaactcttggtgtcat 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcactggg 33
|||||||||||||| ||| ||||||||||||
Sbjct: 5 cccctagagttcccttgaacacttcactggg 35
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||| |||||||||
Sbjct: 48 actgaagtgtttgggggaactcttggtgtcat 79
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ctactgaagtgtttgggggaactcctgg 80
||||||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||||| ||||||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtgtcat 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 cccctagagttcccctgaccacttcac 29
|||||||||||||||||| ||||||||
Sbjct: 5 cccctagagttcccctgagcacttcac 31
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 ctactgaagtgtttgggggaactcc 77
|||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactcc 86
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 cctactgaagtgtttgggggaactc 76
|||||||||||||||||||||||||
Sbjct: 75 cctactgaagtgtttgggggaactc 99
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcctgg 84
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcctgg 80
|||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcctgg 89
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcctggtgtcat 86
||||||||||||||||||||||| | ||||||
Sbjct: 69 actgaagtgtttgggggaactcccgatgtcat 100
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcctggtgtcat 86
||||||||||||||||| |||| |||||||||
Sbjct: 69 actgaagtgtttggggggactcttggtgtcat 100
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctgg 80
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgg 108
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tactgaagtgtttgggggaactcc 77
||||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactcc 82
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tactgaagtgtttgggggaactc 76
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tactgaagtgtttgggggaactc 76
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactcc 77
|||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactcc 84
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcct 78
|||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcct 86
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactc 76
||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagttcccctgaccacttcactgggg 34
||||| ||||||||||||||||||||
Sbjct: 11 gagtttccctgaccacttcactgggg 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 actgaagtgtttgggggaactc 76
||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactc 104
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagttcccctgaccacttcactgggg 34
|||||||| |||||||||||||||||
Sbjct: 11 gagttcccttgaccacttcactgggg 36
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ctgaagtgtttgggggaactcc 77
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtgtcat 86
|||||||||||||||||||| |||| ||||
Sbjct: 62 tgaagtgtttgggggaactcttggtatcat 91
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 56 tgaagtgtttgggggaactcttggtg 81
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcctggtg 82
|||||||||||||||||||| |||||
Sbjct: 85 tgaagtgtttgggggaactcttggtg 110
