miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttccta 63
Query: 61 ctgaagtgtttgggggaactcctggtgc 88
||||||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcctggtgc 91
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttccta 60
||||||||||||||||||| ||||||||| |||| |||| ||| || |||||||||||||
Sbjct: 4 tcccctagagttcccttgatcacttcactagggagcttcgctagttttaatgacttccta 63
Query: 61 ctgaagtgtttgggggaactcctggt 86
||||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcctggt 89
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 111 bits (56), Expect = 2e-24
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttccta 60
||||||||||||||| |||||||||||||||||| |||||||||| |||| || | ||
Sbjct: 4 tcccctagagttcccctgaccacttcactggggatcttctctaat--gaatgcctacgta 61
Query: 61 ctgaagtgtttgggggaactcctggtgccat 91
|||||||||||||||||||||||||||||||
Sbjct: 62 ctgaagtgtttgggggaactcctggtgccat 92
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 101 bits (51), Expect = 2e-21
Identities = 77/86 (89%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 2 cccctagagttcccttgaccacttcactggggaccttctctaattataatgacttcctac 61
|||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||
Sbjct: 5 cccctagagttcccctgaccacttcactggggatcttctgtaat------gacttcctac 58
Query: 62 tgaagtgtttgggggaactcctggtg 87
||||||||||||||||||||||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 101 bits (51), Expect = 2e-21
Identities = 77/86 (89%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 2 cccctagagttcccttgaccacttcactggggaccttctctaattataatgacttcctac 61
|||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||
Sbjct: 5 cccctagagttcccctgaccacttcactggggatcttctttaat------gacttcctac 58
Query: 62 tgaagtgtttgggggaactcctggtg 87
||||||||||||||||||||||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 54 cttcctactgaagtgtttgggggaactcctggtg 87
||||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggtg 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggg 32
||||||||||||||||||| ||||||||||||
Sbjct: 4 tcccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 ttcctactgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||||||||||||||||
Sbjct: 66 ttcctactgaagtgtttgggggaactcctggtg 98
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 ttcctactgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||||||||||||||||
Sbjct: 67 ttcctactgaagtgtttgggggaactcctggtg 99
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 ttcctactgaagtgtttgggggaactcctggtg 87
|||| ||||||||||||||||||||||||||||
Sbjct: 63 ttcccactgaagtgtttgggggaactcctggtg 95
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggg 32
||||||||||||||||||| ||||||||||||
Sbjct: 4 tcccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 ttcctactgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||||||||||| ||||
Sbjct: 52 ttcctactgaagtgtttgggggaactcccggtg 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactgggga 34
||||||||||||||| ||| ||||||| ||||||
Sbjct: 4 tcccctagagttcccctgagcacttcattgggga 37
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttcactggg 32
||||||||||||||||||| ||||||||||||
Sbjct: 4 tcccctagagttcccttgaacacttcactggg 35
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 54 cttcctactgaagtgtttgggggaactcctggtg 87
||||| |||||||||||||||||||||| |||||
Sbjct: 49 cttccaactgaagtgtttgggggaactcttggtg 82
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactcctggtg 87
||||||||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactcctggtg 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcccctagagttcccttgaccacttca 27
|||||||||||||||||||||||||||
Sbjct: 4 tcccctagagttcccttgaccacttca 30
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 ctactgaagtgtttgggggaactcctgg 85
||||||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 57 cctactgaagtgtttgggggaactcctggtgccat 91
||||||||||||||||||||||||| ||||||||
Sbjct: 75 cctactgaagtgtttgggggaactctaggtgccat 109
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gagttcccttgaccacttcactgggg 33
||||||||||||||||||||||||||
Sbjct: 11 gagttcccttgaccacttcactgggg 36
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactcctggtgccat 91
|||||||||||||||||||| |||||||||
Sbjct: 85 tgaagtgtttgggggaactcttggtgccat 114
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ctactgaagtgtttgggggaactcc 82
|||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactcc 86
>RF00451;mir-395;AC194694.1/86392-86482 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ccctagagttcccttgaccacttca 27
|||||||||||||||||||||||||
Sbjct: 6 ccctagagttcccttgaccacttca 30
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcctgg 85
|||||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcctgg 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 cctagagttcccttgaccacttca 27
||||||||||||||||||||||||
Sbjct: 6 cctagagttcccttgaccacttca 29
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ccctagagttcccttgaccacttca 27
|||||||||||||||||||||||||
Sbjct: 6 ccctagagttcccttgaccacttca 30
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcctgg 85
|||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcctgg 85
|||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcctgg 89
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactcctggtgcca 90
|||||||||||||||||||| ||||||||
Sbjct: 56 tgaagtgtttgggggaactcttggtgcca 84
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||||| |||||
Sbjct: 48 actgaagtgtttgggggaactcttggtg 75
>RF00451;mir-395;AC189385.2/27677-27556 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactcctggtgccat 91
||||||||||||||||| |||| |||||||||
Sbjct: 91 actgaagtgtttggggggactcgtggtgccat 122
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactcctgg 85
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgg 108
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tactgaagtgtttgggggaactcc 82
||||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactcc 82
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tactgaagtgtttgggggaactc 81
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tactgaagtgtttgggggaactc 81
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||||| ||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtg 91
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactcc 82
|||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactcc 84
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactcc 82
|||||||||||||||||||||||
Sbjct: 69 actgaagtgtttgggggaactcc 91
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcct 83
|||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcct 86
>RF00451;mir-395;AC145120.1/105818-105725 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ctagagttcccttgaccacttca 27
|||||||||||||||||||||||
Sbjct: 8 ctagagttcccttgaccacttca 30
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 actgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactc 104
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctgaagtgtttgggggaactcc 82
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactcctggtg 87
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99