miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 161 bits (81), Expect = 2e-39
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggggaccttctctagttataatgacttcct 60
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 gtcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttcct 62
Query: 61 actgaagtgtttgggggaactcctggtgc 89
|||||||||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactcctggtgc 91
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 133 bits (67), Expect = 4e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggggaccttctctagttataatgacttcct 60
|||||||||||||||||||| ||||||||| |||| |||| |||||| ||||||||||||
Sbjct: 3 gtcccctagagttcccttgatcacttcactagggagcttcgctagttttaatgacttcct 62
Query: 61 actgaagtgtttgggggaactcctggt 87
|||||||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactcctggt 89
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 97.6 bits (49), Expect = 2e-20
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggggaccttctctagttataatgacttcct 60
|||||||||||||||| ||| |||||||||||||| |||||||| | | ||| || | |
Sbjct: 3 gtcccctagagttcccctgaccacttcactggggatcttctctaatga--atgcctacgt 60
Query: 61 actgaagtgtttgggggaactcctggtgccat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 actgaagtgtttgggggaactcctggtgccat 92
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 76/86 (88%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 3 cccctagagttcccttgaacacttcactggggaccttctctagttataatgacttcctac 62
|||||||||||||| ||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 5 cccctagagttcccctgaccacttcactggggatcttctgta------atgacttcctac 58
Query: 63 tgaagtgtttgggggaactcctggtg 88
||||||||||||||||||||||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 76/86 (88%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 3 cccctagagttcccttgaacacttcactggggaccttctctagttataatgacttcctac 62
|||||||||||||| ||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 5 cccctagagttcccctgaccacttcactggggatcttcttta------atgacttcctac 58
Query: 63 tgaagtgtttgggggaactcctggtg 88
||||||||||||||||||||||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 55 cttcctactgaagtgtttgggggaactcctggtg 88
||||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggtg 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggg 33
|||||||||||||||||||| ||||||||||||
Sbjct: 3 gtcccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ttcctactgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||||||||||||||||
Sbjct: 66 ttcctactgaagtgtttgggggaactcctggtg 98
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ttcctactgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||||||||||||||||
Sbjct: 67 ttcctactgaagtgtttgggggaactcctggtg 99
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggg 33
|||||||||||||||||||||||||||||||||
Sbjct: 3 gtcccctagagttcccttgaacacttcactggg 35
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 55 cttcctactgaagtgtttgggggaactcctggtg 88
||||| |||||||||||||||||||||| |||||
Sbjct: 49 cttccaactgaagtgtttgggggaactcttggtg 82
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttcactggg 33
|||||||||||||||||||| ||||||||||||
Sbjct: 3 gtcccctagagttcccttgagcacttcactggg 35
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 ttcctactgaagtgtttgggggaactcctggtg 88
|||| ||||||||||||||||||||||||||||
Sbjct: 63 ttcccactgaagtgtttgggggaactcctggtg 95
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 ttcctactgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||||||||||| ||||
Sbjct: 52 ttcctactgaagtgtttgggggaactcccggtg 84
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactcctggtg 88
||||||||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactcctggtg 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtcccctagagttcccttgaacacttca 28
|||||||||||||||||||| |||||||
Sbjct: 3 gtcccctagagttcccttgaccacttca 30
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 ctactgaagtgtttgggggaactcctgg 86
||||||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 cctactgaagtgtttgggggaactcctggtgccat 92
||||||||||||||||||||||||| ||||||||
Sbjct: 75 cctactgaagtgtttgggggaactctaggtgccat 109
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 tgaagtgtttgggggaactcctggtgccat 92
|||||||||||||||||||| |||||||||
Sbjct: 85 tgaagtgtttgggggaactcttggtgccat 114
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 ctactgaagtgtttgggggaactcc 83
|||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactcc 86
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcctgg 86
|||||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcctgg 84
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcctgg 86
|||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcctgg 86
|||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcctgg 89
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 tgaagtgtttgggggaactcctggtgcca 91
|||||||||||||||||||| ||||||||
Sbjct: 56 tgaagtgtttgggggaactcttggtgcca 84
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||||| |||||
Sbjct: 48 actgaagtgtttgggggaactcttggtg 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tcccctagagttcccttgaacacttcactg 31
|||||| |||||||||| ||||||||||||
Sbjct: 4 tcccctggagttcccttaaacacttcactg 33
>RF00451;mir-395;AC189385.2/27677-27556 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactcctggtgccat 92
||||||||||||||||| |||| |||||||||
Sbjct: 91 actgaagtgtttggggggactcgtggtgccat 122
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 tgaagtgtttgggggaactcctgg 86
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgg 108
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tactgaagtgtttgggggaactcc 83
||||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactcc 82
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tactgaagtgtttgggggaactc 82
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tactgaagtgtttgggggaactc 82
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||||| ||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtg 91
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactcc 83
|||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactcc 84
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactcc 83
|||||||||||||||||||||||
Sbjct: 69 actgaagtgtttgggggaactcc 91
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcct 84
|||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcct 86
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactc 82
||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 actgaagtgtttgggggaactc 82
||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactc 104
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagttcccttgaacacttcactgggg 34
|||||||||||| |||||||||||||
Sbjct: 11 gagttcccttgaccacttcactgggg 36
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 ctgaagtgtttgggggaactcc 83
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgaagtgtttgggggaactcctggtg 88
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
