miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 236 bits (119), Expect = 5e-62
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcatttttcagactactggtgtgtttttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatttttcagactactggtgtgtttttgt 60
Query: 61 atgcactcaaagtcattgtaacagttgcggttcaataaagctgtgggaagataccaaca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcactcaaagtcattgtaacagttgcggttcaataaagctgtgggaagataccaaca 119
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagataccaaca 119
|||||||||||||||||||||||||||||| ||||
Sbjct: 132 ttgcggttcaataaagctgtgggaagatacgaaca 166
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 72 ttgcggttcaataaagctgtgggaagatac 101
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagata 113
|||||||||||||||||||||||||||||
Sbjct: 66 ttgcggttcaataaagctgtgggaagata 94
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 2 tttgtattcttccacagctttcttgaactgcat 34
|||||||||||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagatac 96
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctttgtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 86 tgcggttcaataaagctgtgggaagataccaaca 119
||||||||||||||||||||||||||||| ||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaaaca 135
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 84 gttgcggttcaataaagctgtgggaagataccaaca 119
||||||||||||||||||||||||||||||| ||||
Sbjct: 91 gttgcggttcaataaagctgtgggaagatacaaaca 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 tgtattcttccacagctttcttgaactgca 33
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 ttgcggttcaataaagctgtgggaagatac 114
||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatac 147
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcatttttca 40
|||||||||||||||||||| | |||||||
Sbjct: 11 ttccacagctttcttgaacttcttttttca 40
