miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AM467681.2/12374-12276 29760:Vitis vinifera
Length = 99
Score = 184 bits (93), Expect = 1e-46
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 gagaataacagtgtgattctcctttggcagagatatcacgcatggagtagaaggcggtag 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 gagaataacagtgtgattctcctttggcagagatatcatgcatggagtagaaggcggtag 62
Query: 61 ctgctctgccaaaggagaattgccctgttattcaatt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctgctctgccaaaggagaattgccctgttattcaatt 99
>RF00445;mir-399;AASG02001979.1/21180-21275 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctgttattcaa 95
||||||||||||||||||||||||||||||
Sbjct: 65 ctgccaaaggagaattgccctgttattcaa 94
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus
trichocarpa
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 65 tctgccaaaggagaattgccctgttattca 94
||||||||||||||||||| | ||||||||
Sbjct: 33 tctgccaaaggagaattgcacagttattca 4
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctg 85
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 82 ctgccaaaggagaattgccctg 103
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ctgccaaaggagaattgccctg 87
||||||||||||||||||||||
Sbjct: 82 ctgccaaaggagaattgccctg 103
