miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 79 atgtgacttgccaaaggagagttgccctgtgactgcttc 117
|||| ||||||||||||||||||||||||| ||||||||
Sbjct: 77 atgtcacttgccaaaggagagttgccctgtcactgcttc 115
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 84 acttgccaaaggagagttgccctgtgactgctt 116
|||||||||||||||||||||||||| ||||||
Sbjct: 70 acttgccaaaggagagttgccctgtggctgctt 102
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
(castor bean)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgtgactgctt 116
||||||||||||||| ||||||||||||||||
Sbjct: 83 cttgccaaaggagagctgccctgtgactgctt 114
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 84 acttgccaaaggagagttgccctgtgactgcttc 117
|||||||||||||||| |||||||||| ||||||
Sbjct: 100 acttgccaaaggagagctgccctgtgattgcttc 133
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 atgtgacttgccaaaggagagttgccctgt 108
||||| ||||||||||||||||||||||||
Sbjct: 56 atgtgtcttgccaaaggagagttgccctgt 85
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 gccaaaggagagttgccctgtgactgcttc 117
||||||||||||||||||||||||| ||||
Sbjct: 95 gccaaaggagagttgccctgtgactacttc 124
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 tgtgacttgccaaaggagagttgccctgt 108
|||| ||||||||||||||||||||||||
Sbjct: 56 tgtgtcttgccaaaggagagttgccctgt 84
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgt 108
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
