miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 222 bits (112), Expect = 7e-58
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 gcatattacagggcaaattatcttttggcaggcagccacttagagacacagccaagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcatattacagggcaaattatcttttggcaggcagccacttagagacacagccaagccat 64
Query: 61 gcattcttgtagtgtgccctctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcattcttgtagtgtgccctctgccaaaggagatttgcccggcaattcttct 116
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 agtgtgccctctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 74 agtgtgccctctgccaaaggagatttgtccggcaaatcttct 115
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 agtgtgccctctgccaaaggagatttgcccggcaattcttct 112
|||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 79 agtgtgccttctgccaaaggagatttgcccagcaattcttct 120
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||||||||||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattcttct 94
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagatttgcccggcaattcttct 112
|||||||||||||||||||||||||||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattcttct 122
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
||||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaattct 109
|||||||||||||||||||||||| ||||||
Sbjct: 85 ctctgccaaaggagatttgcccggtaattct 115
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 82 tgccaaaggagatttgcccggcaattcttct 112
|||||||| ||||||||||||||||||||||
Sbjct: 81 tgccaaagaagatttgcccggcaattcttct 111
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||||| |||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaattc 96
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagatttgcccggcaattcttct 112
||||||||||||||||||||| | |||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattcttct 123
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattct 109
|||||||||||||||||||| ||||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattct 113
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaattc 132
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaattc 115
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattcttct 112
|||||||||||||||||||| | |||||||||
Sbjct: 86 ctgccaaaggagatttgcccagtaattcttct 117
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattc 108
|||||||||||||||||||| |||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaattc 104
>RF00445;mir-399;AASG02004610.1/1319-1202 3988:Ricinus communis
(castor bean)
Length = 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattcttct 112
||||||| |||||||||||||||||| |||||
Sbjct: 87 ctgccaagggagatttgcccggcaatacttct 118
>RF00445;mir-399;AASG02004610.1/4629-4514 3988:Ricinus communis
(castor bean)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaattcttct 112
||||||| || |||||||||||||||||||||
Sbjct: 85 ctgccaatggggatttgcccggcaattcttct 116
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||| |||||
Sbjct: 68 ctctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||||| |||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 cctctgccaaaggagatttgcc 99
||||||||||||||||||||||
Sbjct: 75 cctctgccaaaggagatttgcc 96
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagatttgcccggc 103
||||||||||||||||||||||
Sbjct: 78 tgccaaaggagatttgcccggc 99
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagatttgcccggcaattct 109
||||||||||||||||||||| || |||||
Sbjct: 83 tctgccaaaggagatttgcccagcgattct 112
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagatttgccc 100
||||||||||||||||||| ||||||
Sbjct: 65 tgccctctgccaaaggagagttgccc 90
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||| |||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagatttgcccggcaat 106
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
