miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 198 bits (100), Expect = 1e-50
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacggcgttagattcacgcacaaactcgtga 108
||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 taatcaccgggcgattcgacgccgttagattcacgcacaaactcgtga 108
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 81 ggcgttagattcacgcacaaactcg 105
|||||||||||||||||||||||||
Sbjct: 65 ggcgttagattcacgcacaaactcg 89
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtga 108
|||||||||||||||||||||||||
Sbjct: 77 gttagattcacgcacaaactcgtga 101
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtga 108
|||||||||||||||||||||||||
Sbjct: 74 gttagattcacgcacaaactcgtga 98
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgt 106
||||||||||||||||||||||
Sbjct: 69 ttagattcacgcacaaactcgt 90
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgt 106
||||||||||||||||||||||
Sbjct: 88 ttagattcacgcacaaactcgt 109
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgt 106
||||||||||||||||||||||
Sbjct: 101 ttagattcacgcacaaactcgt 122
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcg 105
||||||||||||||||||||||
Sbjct: 55 gttagattcacgcacaaactcg 76
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgt 106
||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgt 99
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcg 105
||||||||||||||||||||||
Sbjct: 55 gttagattcacgcacaaactcg 76
