miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 212 bits (107), Expect = 7e-55
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacatctcaagtttgtgcgtgaatcaaaccccatcgtagccgtccatatcttcgggtac 60
Query: 61 taatcacggggcgattcgacgccgttagattcacgcacaaactcgtgatctgtcc 115
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 taatcaccgggcgattcgacgccgttagattcacgcacaaactcgtgatcagtcc 115
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||||||||||||
Sbjct: 77 gttagattcacgcacaaactcgtgatctgtc 107
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 83 cgttagattcacgcacaaactcgtgatctgtc 114
||||||||||||||||||||||| ||||||||
Sbjct: 67 cgttagattcacgcacaaactcgcgatctgtc 98
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatct 111
||||||||||||||||||||||||||||
Sbjct: 74 gttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 84 gttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| ||||||||
Sbjct: 55 gttagattcacgcacaaactcgggatctgtc 85
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 69 ttagattcacgcacaaactcgtaatctgtc 98
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 88 ttagattcacgcacaaactcgtaatctgtc 117
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtc 130
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 ttagattcacgcacaaactcgtgatctgtc 114
|||||||||||||||||||||| |||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtc 107
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 86 tagattcacgcacaaactcgtgatctgtc 114
||||||||||||||||||||| |||||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtc 145
