miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01925;MIR1428;AK102950.1/85-208 39947:Oryza sativa Japonica Group
Length = 124
Score = 246 bits (124), Expect = 6e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 5 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 60
Query: 65 atttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttca 120
Query: 125 aacc 128
||||
Sbjct: 121 aacc 124
>RF01925;MIR1428;AP003208.3/119377-119500 39947:Oryza sativa
Japonica Group
Length = 124
Score = 143 bits (72), Expect = 7e-34
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 5 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 64
|||||||||| || || ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1 ggttagtgcgttttgcaaattcgcaggccctatcttgtggtatgaactgagtacgcgatg 60
Query: 65 atttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttca 124
|||| ||||||||||||||||||||||||||||| ||| |||||||| || ||||||
Sbjct: 61 atttatcctgcgtattgggggcttaccataagataaagccgtgaatttgcaaaacgttca 120
Query: 125 aacc 128
||||
Sbjct: 121 aacc 124
>RF01925;MIR1428;CT829550.1/403-526 39946:Oryza sativa Indica Group
Length = 124
Score = 133 bits (67), Expect = 6e-31
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 6 gttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatga 65
||||||||||||||||||||| || ||||||||||||||||||||||| | || |||| |
Sbjct: 2 gttagtgcgcttggcgaattcgcatgccctatcttgtggtatgaactgagcacacgataa 61
Query: 66 tttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttcaa 125
||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 62 tttatggtgcgtattgggggcttacaataagataatgccgtgaatttgctaagcgttcaa 121
Query: 126 acc 128
|||
Sbjct: 122 acc 124
>RF01925;MIR1428;AP004317.1/76457-76580 39947:Oryza sativa Japonica
Group
Length = 124
Score = 127 bits (64), Expect = 4e-29
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 5 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 64
||||||||||||| |||||||||| || | ||||||||||||||||||| ||||| |||
Sbjct: 1 ggttagtgcgctttgcgaattcacgggtcttatcttgtggtatgaactgagtacgtaatg 60
Query: 65 atttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttca 124
|||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 61 atttatggtgcatattgggggcttaccataagataatgccatgaattcgcaaagcgttca 120
Query: 125 aacc 128
||||
Sbjct: 121 aacc 124
>RF01925;MIR1428;AP008209.1/20914589-20914712 39947:Oryza sativa
Japonica Group
Length = 124
Score = 107 bits (54), Expect = 4e-23
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 5 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 64
||||||||||||| ||||||| ||| ||| ||||||||||||||||||| |||||||||
Sbjct: 1 ggttagtgcgctttgcgaatttacatgccttatcttgtggtatgaactgagtacgcgata 60
Query: 65 atttgcactgcgtattgggggcttaccataagataatg 102
|||| || |||||||||||||||||||||||||||
Sbjct: 61 atttatggtgtgtattgggggcttaccataagataatg 98
>RF01925;MIR1428;AP008211.1/18802928-18802805 39947:Oryza sativa
Japonica Group
Length = 124
Score = 89.7 bits (45), Expect = 9e-18
Identities = 91/105 (86%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 24 ttcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattggg 83
||||||||||||| ||| |||||||||||| ||||||||||||| |||||||| |
Sbjct: 21 ttcacaggcccta-cttctggtatgaactgagtacgcgatgattcatggtgcgtattaga 79
Query: 84 ggcttaccataagataatgccatgaatttgtcaagcgttcaaacc 128
||||||||||||||||||| | |||||| | ||||||||||||||
Sbjct: 80 ggcttaccataagataatgtcgtgaattcgccaagcgttcaaacc 124
>RF01925;MIR1428;AAAA02009114.1/9641-9518 39946:Oryza sativa Indica
Group
Length = 124
Score = 87.7 bits (44), Expect = 3e-17
Identities = 104/124 (83%)
Strand = Plus / Plus
Query: 5 ggttagtgcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatg 64
||||||||| ||| || |||| ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1 ggttagtgcactttgcaaatttgcaggctctatcttgtggtatgaaatgagtacgcgatg 60
Query: 65 atttgcactgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgttca 124
||| ||||||||||||||| |||||||||||| ||| ||||||| ||| |||||
Sbjct: 61 attccttttgcgtattgggggctgaccataagataaagccgcgaatttgcaaagtgttca 120
Query: 125 aacc 128
||||
Sbjct: 121 aacc 124
>RF01925;MIR1428;AP008215.1/17601136-17601259 39947:Oryza sativa
Japonica Group
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 19 gcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgta 78
||||||||||||| | |||||||||||||||||| ||||| |||||||| || |||
Sbjct: 15 gcgaattcacaggacatatcttgtggtatgaactaagtacgtgatgatttatggtgtgta 74
Query: 79 ttgggggcttaccataagataatgccatgaatttg 113
|||||||||||||||||||||| || ||||||||
Sbjct: 75 ttgggggcttaccataagataaggctgtgaatttg 109
>RF01925;MIR1428;AP005676.3/52831-52709 39947:Oryza sativa
Japonica Group
Length = 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 21 gaattcacaggccctatcttgtggtatgaactgggtacgcgatgatt 67
|||||||||||| |||||||||||||||||||| |||| || |||||
Sbjct: 17 gaattcacaggctctatcttgtggtatgaactgagtacacggtgatt 63
