miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
Query: 61 ttcacgcacaaactcgggatctgtct 86
||||||||||||||||||||||||||
Sbjct: 61 ttcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 155 bits (78), Expect = 1e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 acaaacctcgagtttgtgcgcgaatccaacccctcaatcttctttcaaaggggtgttaga 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 acaaacctcgagtttgtgcgcgaatccaacgcctcgatcttctttcaaaggggtgttaga 60
Query: 61 ttcacgcacaaactcgggatctgtct 86
||||||||||||||||||||||||||
Sbjct: 61 ttcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 52 ggtgttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||||||| |||||||||
Sbjct: 74 ggtgttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcgggatctgtct 86
|||||||||||||||||||||| |||||||||
Sbjct: 68 gttagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 ggtgttagattcacgcacaaactcgggatct 82
||||||||||||||||||||||||| |||||
Sbjct: 71 ggtgttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 69 ttagattcacgcacaaactcgtaatctgtct 99
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 88 ttagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtct 131
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 gttagattcacgcacaaactcgggatc 81
|||||||||||||||||||||| ||||
Sbjct: 84 gttagattcacgcacaaactcgtgatc 110
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 ttagattcacgcacaaactcgggatctgtct 86
||||||||||||||||||||| ||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tagattcacgcacaaactcgggatctgtct 86
|||||||||||||||||||| ||||||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146
