miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00780;MIR477;AM482456.2/1757-1847 29760:Vitis vinifera
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 gaagttgtcaatctccctcaaaggcttccaattttcctggctgattatcaaggttggaaa 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagttgtcaacctccctcaaaggcttccaattttcctggctgattatcaaggttggaaa 60
Query: 61 gttggaagacagtgggggaccttggaagctt 91
| |||||| | |||||||||||| ||||||
Sbjct: 61 gctggaagccgatgggggaccttgaaagctt 91
>RF00780;MIR477;CAAP02000718.1/63029-63119 29760:Vitis vinifera
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 gaagttgtcaatctccctcaaaggcttccaattttcctggctgattatcaaggttggaaa 60
||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 1 gaagttgtcaacctccctcaaaggcttccaattttcctgactgattatcgaggttggaaa 60
Query: 61 gttggaagacagtgggggaccttggaagctt 91
|||||||| | ||||||||||||| ||||||
Sbjct: 61 gttggaagccggtgggggaccttgaaagctt 91
>RF00780;MIR477;AM464460.2/13269-13179 29760:Vitis vinifera
Length = 91
Score = 117 bits (59), Expect = 3e-26
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 1 gaagttgtcaatctccctcaaaggcttccaattttcctggctgattatcaaggttggaaa 60
|||||| |||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 gaagttctcaacctccctcaaaggcttccaattttcctgactgattatcaagattggaaa 60
Query: 61 gttggaagacagtgggggaccttggaagctt 91
|||||||| | |||||||| |||| ||||||
Sbjct: 61 gttggaagtcggtgggggaacttgaaagctt 91
>RF00780;MIR477;CAAP02001422.1/68193-68102 29760:Vitis vinifera
Length = 92
Score = 111 bits (56), Expect = 2e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 gaagttgtcaatctccctcaaaggcttccaattttcctggctgattatcaaggt-tggaa 59
||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 1 gaagttgtcaacctccctcaaaggcttccaattttcctggctaattatcaaggtaagaaa 60
Query: 60 agttggaagacagtgggggaccttggaagctt 91
||||||||| | ||||||||||||| ||||||
Sbjct: 61 agttggaagccggtgggggaccttgaaagctt 92
>RF00780;MIR477;AASG02000511.1/21598-21512 3988:Ricinus communis
(castor bean)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 caatctccctcaaaggcttccaa 31
|||||||||||||||||||||||
Sbjct: 9 caatctccctcaaaggcttccaa 31
