miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gtagacatggtgtggtattggttcggctcatcttctttcattcattttcatcggctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtagacatggtgtggtattggttcggctcatcttctttcattcattttcatcggctcaaa 67
Query: 61 gacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 68 gacgagccgaaccaatatcactcttgtatgcttc 101
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||| ||||||||||||||||||||||
Sbjct: 75 aagacgagccgaatcaatatcactcttgtatgcttc 110
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 gtagacatggtgtggtattggttcggctcatcttct 36
||||||| |||||| ||||||| |||||||||||||
Sbjct: 8 gtagacacggtgtgatattggtccggctcatcttct 43
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 aagacgagccgaaccaatatcactcttgtatgcttc 94
||||||||||||| |||||||||||||||| |||||
Sbjct: 70 aagacgagccgaatcaatatcactcttgtacgcttc 105
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 cgagccgaaccaatatcactcttgtatgcttc 94
||||||||| ||||||||||||||||||||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgcttc 116
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 60 agacgagccgaaccaatatcactcttgtatgcttc 94
|||||||||||| ||||||||||||||| ||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgtttgcttc 114
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 agacatggtgtggtattggttcggctcatct 33
||||| |||||||||||||||||| ||||||
Sbjct: 10 agacaaggtgtggtattggttcggttcatct 40
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 cgagccgaaccaatatcactcttgtat 89
||||||||| |||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 60 agacgagccgaaccaatatcactcttgtatg 90
|||||||||||| ||||||||||| ||||||
Sbjct: 77 agacgagccgaatcaatatcactcctgtatg 107
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 78 gagccgaaccaatatcactcatgtattcttc 108
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 83 gagccgaaccaatatcactcatgtattcttc 113
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gagccgaaccaatatcactcttgtatgcttc 94
|||||||||||||||||||| ||||| ||||
Sbjct: 56 gagccgaaccaatatcactcatgtattcttc 86
