miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;CAAP02013010.1/2187-2087 29760:Vitis vinifera
Length = 101
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 3 taattgcttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgt 62
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 3 taattgcttgacaacgagagagagcatgcttgtcagcattcatgtgaggaacatgactgt 62
Query: 63 gtacaggcgtgctctctctcgctgtcatacaatcttc 99
|||||||||||||||| ||||| |||||||||||||
Sbjct: 63 ttacaggcgtgctctctatcgctatcatacaatcttc 99
>RF00714;MIR535;CAAP02011100.1/4619-4518 29760:Vitis vinifera
Length = 102
Score = 117 bits (59), Expect = 3e-26
Identities = 90/99 (90%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 aattgcttgacaacgagagagagcacgctagtcagcattcatgcgagg-aacatgactgt 62
||||||||||||| |||||||||||| || || |||||||||| ||| |||||||||||
Sbjct: 4 aattgcttgacaaagagagagagcacacttgttagcattcatgtaaggtaacatgactgt 63
Query: 63 gtacaggcgtgctctctctcgctgtcatacaatcttctc 101
||||||| ||||| |||||||||||||||||||||||||
Sbjct: 64 gtacaggtgtgctttctctcgctgtcatacaatcttctc 102
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacaggc 70
|||||||||||||||||||||| || | || |||| ||||| | |||| ||||||| |||
Sbjct: 11 tgacaacgagagagagcacgcttgttatcactcatccgaggtatatgattgtgtacgggc 70
Query: 71 gtgctctctctcgctgtcatacaatct 97
||||||| | ||| |||||||||||||
Sbjct: 71 gtgctctatgtcgttgtcatacaatct 97
>RF00714;MIR535;AASG02007689.1/8432-8332 3988:Ricinus communis
(castor bean)
Length = 101
Score = 71.9 bits (36), Expect = 1e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacagg 69
||||| ||||||||||||||| | ||||||| |||||| | | ||||| |||| |||| |
Sbjct: 10 ttgacgacgagagagagcacgtttgtcagcagtcatgcaatggacatgtctgtctacatg 69
Query: 70 cgtgctctctctcgctgtcatacaatcttctc 101
|||||||||| | || |||||||||| |||||
Sbjct: 70 cgtgctctcttttgccgtcatacaattttctc 101
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 56.0 bits (28), Expect = 9e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 10 ttgacaacgagagagagcacgctagtcagcattcatgcgaggaacatg 57
||||||||||||||||||||||| || ||| |||||| |||||||||
Sbjct: 10 ttgacaacgagagagagcacgcttgttagccttcatgtaaggaacatg 57
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacaacgagagagagcacgct 32
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
